Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11431
Subject:
NM_001366449.1
Aligned Length:
1836
Identities:
714
Gaps:
1101

Alignment

Query    1  ATGGAGGTCAGAGCTTCATTACAGAAGATAGTTTCTAATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTCAGAGTTCCAGTGAGATTTCAGACCATT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  TCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATTCTGTGCACGTGGACATGACGGAACAAC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAA  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  TAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATG  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  TTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACTGGATATGGAATCCATGGGAAAGAGCTA  962
                                                                        ||||||||||||||
Sbjct    1  ------------------------------------------------------------ATGGGAAAGAGCTA  14

Query  963  TGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   15  TGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAA  88

Query 1037  CCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   89  CCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGC  162

Query 1111  TTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCAC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  163  TTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCAC  236

Query 1185  AGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATACCAATGCTGGAGATGCAATATATGAGG  1258
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  AGAGACTTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATACCAATGCTGGAGATGCAATATATGAGG  310

Query 1259  TGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  311  TGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCC  384

Query 1333  CAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  385  CAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCC  458

Query 1407  TGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  459  TGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGC  532

Query 1481  TGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCAT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  533  TGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCAT  606

Query 1555  GACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAGCAACAGATGAAATTT------AGTCTTAC  1622
            ||||||||||||||||||||||||||||||||||||||||||||| ..|.|.||.|.|||      .|||   |
Sbjct  607  GACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAG-GTCTGTTGGAGTTTGCTGGAGGTC---C  676

Query 1623  AC-CGAGACAGACTATTCACCTAGTTAAATATGAAGGGTCTAT--------GAAGGTCTCCATGACACCCTGTA  1687
            || |.||||  .||.||..|||             |||  |||        ||||  ||.||..|||       
Sbjct  677  ACTCCAGAC--CCTGTTTGCCT-------------GGG--TATCACCAGTGGAAG--CTGCAGAACA-------  724

Query 1688  ACCAGCTGCAATTTGACATT--AGACTTG---ATGTT-CTGATTACTTATACTTTTTGTTTTAGTTCCTTTCCT  1755
                   ||||    |.|||  |||.|.|   ||||| |||..                               
Sbjct  725  -------GCAA----ATATTGCAGAATGGCAAATGTTGCTGCC-------------------------------  756

Query 1756  GAGCCTGAATTGTACAAATATGTCCTAAAACACCAACTTATTAAGAGGCTTAATGCCTGT  1815
                                                                        
Sbjct  757  ------------------------------------------------------------  756

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