Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11431
Subject:
XM_006496878.3
Aligned Length:
3069
Identities:
1521
Gaps:
1344

Alignment

Query    1  ATGGAGGTCAGAGCTTCATTACAGAAGATAGTTTCTAATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGAT  74
                                                                           |||||||||||
Sbjct    1  ---------------------------------------------------------------ATGGAAGAGAT  11

Query   75  TTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTCAGAGTTCCAGTGAGATTTCAGACCATT  148
            |||||||||||||||||||.|.|.||||.||||.|.|||||||||.||..|.||||||||||||||||||..|.
Sbjct   12  TTTGAGAGATTCCGAGAAAGGACAAAGCGGTCTACCTGTTGATTGCCAAGGATCCAGTGAGATTTCAGACTGTC  85

Query  149  CGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAA  222
            |.|||||||||.|.||.|||||||||||||.||||||..||||.|||||||||||||||||.|||||.||||||
Sbjct   86  CCTTTGGAGATGTGCCGGCCAGCCAAACAACTAAGCCGCCTCTCCAGTTAATTTTGGATCCATCTAATACAGAA  159

Query  223  ATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTA  296
            |||||.|||||||||||||||||||||.|..||.|.|||||||||||.||||||.|.|||||.||.|||||.||
Sbjct  160  ATTTCCACACCCAGACCATCTTCTCCAAGCAGATTTCCTGAAGAAGACAGTGTTCTCTTTAACAAGCTGACATA  233

Query  297  CTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTT  370
            ||||||||||||||||||||||||||||||.|.||||||.||||||||||||||.|||||.|||||||.|.|||
Sbjct  234  CTTAGGATGTATGAAGGTTTCTTCCCCACGCAGTGAAGTGGAGGCTTTACGGGCCATGGCCACCATGAGAGCTT  307

Query  371  CCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAA  444
            |||||||.|||||||||.|||||||.||||||||.||.||||||||||||||.|||||||||||.||||||||.
Sbjct  308  CCAGTCAGTACCCCTTTGCTGTTACTCTGTATGTGCCCAATGTTCCAGAAGGATCTGTGAGAATCATAGACCAG  381

Query  445  TCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATTCTGTGCACGTGGACATGACGGAACAAC  518
            ||.|||||||||||||||||||||||||||||.|||||.|||.|.||||||||||||||.|||||.||.|||.|
Sbjct  382  TCAAGCAATGTGGAGATAGCATCTTTTCCAATTTATAAAGTGCTTTTCTGTGCACGTGGGCATGATGGGACAGC  455

Query  519  AGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTG  592
            .||||||||||||||||||||||||||||||||.|||||.||.|||||||||||||||||||||||||||||||
Sbjct  456  CGAGAGCAATTGCTTTGCATTTACAGAGAGTTCTCATGGCTCAGAAGAATTTCAGATACATGTTTTCTCCTGTG  529

Query  593  AAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCT  666
            ||||||||||||||||||||||||||||.||.||||||||.||.||||||||||||||||||||||||||||||
Sbjct  530  AAATTAAAGAGGCAGTAAGCAGAATTTTATATAGTTTCTGCACTGCATTCAAACGTTCTTCCAGACAAGTGTCT  603

Query  667  GATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGA  740
            |||||||||||||||||.||.||.||.|||||||||||||||||||||||||||||.|||||||||||.|||||
Sbjct  604  GATGTTAAAGACTCAGTCATCCCGACTCCCGACAGTGATGTGTTTACCTTCAGTGTTTCCTTGGAGGTCAAAGA  677

Query  741  AGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAA  814
            |||.||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  678  AGATGATGGAAAAGGAAACTTTAGTCCCGTGCCTAAGGATAGAGATAAATTTTATTTCAAAATAAAGCAAGGAA  751

Query  815  TAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATG  888
            |||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||.|||||||||||||||
Sbjct  752  TAGAGAAGAAGGTTGTGATTACAGTTCAGCAACTGTCTAACAAAGAATTAGCTATTGAGAGATGTTTTGGAATG  825

Query  889  TTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACTGGATATGGAATCCATGGGAAAGAGCTA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct  826  TTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACTGGATATGGAGTCCATGGGAAAGAGCTA  899

Query  963  TGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAA  1036
            |||||||||||||||.||||||||.|||||||||||||||||.||||||.||||||||||.|||||.||.||||
Sbjct  900  TGATGGGAGAGCTTACGTCATCACGGGCATGTGGAACCCCAACGCACCAATATTTCTGGCTCTTAATGAAGAAA  973

Query 1037  CCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGC  1110
            |.||.||||||||.|..||.||||||||.||.||||||||.|||||.||||||||||||||||||||.||.||.
Sbjct  974  CGCCCAAAGATAAACGGGTGTACATGACCGTTGCAGTGGACATGGTGGTCACAGAGGTGGTGGAGCCAGTCCGT  1047

Query 1111  TTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCAC  1184
            ||||||||||||||||||||.|||||.|||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 1048  TTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAAATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTCAC  1121

Query 1185  AGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATACCAATGCTGGAGATGCAATATATGAGG  1258
            ||||||.|||||||||||.||||||||||||||||||||||||||.|.||.|||||||||||||||||||||.|
Sbjct 1122  AGAGACTTTCTTCATGAGGTTGAAACAGTCTGAGGGAAAAGGCCACAGCAGTGCTGGAGATGCAATATATGAAG  1195

Query 1259  TGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCC  1332
            ||||||||||.|||.||||.||||||||||||||.||..||||.||||||||||..|||||.|||||||||||.
Sbjct 1196  TGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCCCATCACCCCTACTAGTGCTGGGGGCCCAATGTCACCA  1269

Query 1333  CAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCC  1406
            |||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||.||.|||||
Sbjct 1270  CAGGAGGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCGAGTGGAACAGGTGATGTGTCAAAAGACTGTCC  1343

Query 1407  TGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGC  1480
            |||||||||.||.||||||||||||||.|||.||||||.||||||||.|||||||||||..|||||.|||||.|
Sbjct 1344  TGAGAAGATTCTCTATTCTTGGGGAGAATTGTTAGGAAGATGGCACAATAACCTTGGTGGCCGACCAAAAGGAC  1417

Query 1481  TGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCAT  1554
            |.|..||..||||.|||||||||||.|||||.|||.|.||||||||.||||||||..||||.|||||.||||||
Sbjct 1418  TATTCACCTTGGTAAAGAGTGGTGTTCCTGAGGCACTAAGGGCAGAAGTATGGCAACTATTAGCAGGATGCCAT  1491

Query 1555  GACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAGCA------ACAGATGAAATTTAGTCTTAC  1622
            |||||.||||.|||||||||||.|||||||||.||||||||||||.|      ||||..||...|||   ||||
Sbjct 1492  GACAATCAGGAAATGCTGGATAAATACCGAATCCTTATCACAAAGGACTCTGCACAGGAGAGTGTTA---TTAC  1562

Query 1623  ACCGAGACAGACTATTCACC--------------------TAGTT-AAATA---TGAAGGGTCTATGAAGGTCT  1672
             .|||||     ||||||.|                    ||.|| |||.|   ||.|||     .||.|||  
Sbjct 1563  -TCGAGA-----TATTCATCGTACATTTCCTGCACACGATTACTTCAAAGACACTGGAGG-----CGATGGT--  1623

Query 1673  CCATGACACCCTGTA-ACCAGCTGCAATTTGACATTAGACTTGATGTTC--TGATTACTT---ATACT------  1734
             ||.||..||||.|| |..|.||||||   |.|.|   |||.|.|||||  |||..||.|   .||||      
Sbjct 1624  -CAAGAATCCCTTTACAAAATCTGCAA---GGCCT---ACTCGGTGTTCGATGAAGACATTGGGTACTGTCAAG  1690

Query 1735  -------TTTTGTTTTAGTTCCTTTCCT-------------------GAGCCTGAATTGT-----------ACA  1771
                   ||||.||   |.|.||.|.||                   ||||..|.|||.|           ||.
Sbjct 1691  GACAGTCTTTTCTT---GCTGCTGTACTACTGTTGCATATGCCAGAGGAGCAAGCATTCTGTGTTTTGGTGACT  1761

Query 1772  AATATGT------------------CCTAAAACACCAAC--TTATTAAGAGGCTT-AATGC-----CTGT----  1815
            |.|||||                  .||.|.|||..|||  ||.|.|||| .||| |.|||     ||.|    
Sbjct 1762  ATTATGTATGGTTATAAATTGAGAGACTTATACAGAAACAATTTTGAAGA-TCTTCATTGCAAATTCTATCAAC  1834

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 1835  TTGAGAAACTAATGCAGGAACAGCTGCCAGACCTGTACAGCCACTTCTGTGATCTGAACCTGGAAGCTCATATG  1908

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 1909  TATGCATCCCAGTGGTTCCTCACTCTCTTTACTGCCAAGTTTCCACTCTGCATGGTGTTCCACATCATTGACCT  1982

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 1983  TCTGCTGTGTGAGGGTTTGAATATAATCTTTCATGTAGCTTTGGCTCTTCTAAAGACCTCAAAGGAAGACCTCC  2056

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2057  TTCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAGAGTTCAGCTTCCAAAGAGATACCGGGCAGAGGAGAAT  2130

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2131  GCAAGAAGATTGATGGAACAGGCTTGCAATATTAAAGTACCAACCAAAAAGCTGAAGAAATATGAAAAAGAATA  2204

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2205  TCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGACCCAATGGATAGATACAAGAGGGAGAACCGAAGATTAC  2278

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2279  AGGAGGCCAGCATGAGGTTGGAACAAGAAAATGATGACCTTGCCCATGAACTAGTGACAAGCAAAATTGCTCTG  2352

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2353  CGGAATGACTTGGATCAGGCAGAAGACAAGGCTGATGTGCTGAATAAGGAGCTCCTCTTTACCAAGCAGAGGTT  2426

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2427  GGTGGAGACTGAGGAAGAGAAGAGGAAGCAAGAGGAGGAGACCGCCCAGCTAAAAGAAGTCTTCAGGAAACAGT  2500

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2501  TAGAAAAGGCAGAATATGAGATAAAGAAGACAACAGCTATCATTGCTGAGTATAAACAGATATGTTCTCAATTA  2574

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2575  AGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTAGAAGCAGTAAAGGGTAAGATGATGGCATG  2648

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2649  CAAACACTGCAGTGATATCTTCAGCAAGGAAGGAGCTTTAAAGCCAGTGGCCGTAAATAGAGAGGACCAGGGAC  2722

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2723  TTGAAGCAGATGATGAAAAGGACTCACTTAAGAAGCAGCTGAGGGAGATGGAACTGGAACTGGCACAGACCAAA  2796

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2797  CTGCAGCTGGTGGAAGCCAAGTGCAAAATCCAGGAACTTGAGCATCAGAGAGGAGCGCTTATGAATGAAATACA  2870

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2871  AGCTGCAAAAAACTCTTGGTTTAGTAAAACCCTGAACTCTATCAAAACAGCCACAGGCACTCAGCCACTACAGC  2944

Query 1816  -----------------------------------  1815
                                               
Sbjct 2945  CGCCACAGGCTCCCCAGCCACCCAAGGAGAGCACA  2979

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