Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11431
Subject:
XR_922004.1
Aligned Length:
3198
Identities:
1737
Gaps:
1427

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCTTCCTGCCAGGCGGCCCTTCTCCCCTCCCCTCTCAGTTCCCTCCGCCCTCCTCGGGCTCCAGCGGTGGCGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGAACGGGACCGGCCCGGCTTCAGAGCGCGAGGTGGAGGGTGGAACGCGGGCGCCTGAAGGAGTTGTTGTCTC  148

Query    1  -----------------------------------------------------------ATGGAGGTCAGAGCT  15
                                                                       |||||||||||||||
Sbjct  149  GGCAGCGCCCGCGGAGACGTGAAGAGGTGGTTGTGGGAAGAGAAGTTTGCAGAACTGAAATGGAGGTCAGAGCT  222

Query   16  TCATTACA------------------------------------------------------------------  23
            ||||||||                                                                  
Sbjct  223  TCATTACAGAAGGTTAGTGGATCATCTGATTCTGTGGCTACAATGAACAGTGAAGAATTTGTTTTGGTTCCTCA  296

Query   24  ---------------------------------------------GAAGATAGTTTCTAATGGTGATGAACAAT  52
                                                         |||||||||||||||||||||||||||||
Sbjct  297  GTATGCAGATGATAATTCTACAAAACATGAAGAAAAACCTCAACTGAAGATAGTTTCTAATGGTGATGAACAAT  370

Query   53  TGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTCAGAGT  126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  371  TGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTCAAAGT  444

Query  127  TCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAGTTAAT  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAGTTAAT  518

Query  201  TTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGATAGTG  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGATAGTG  592

Query  275  TTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTTTACGG  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTTTACGG  666

Query  349  GCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCAGAAGG  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCAGAAGG  740

Query  423  TTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATTCTGTG  496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATTCTGTG  814

Query  497  CACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAGAATTT  570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAGAATTT  888

Query  571  CAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCATTCAA  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCATTCAA  962

Query  645  ACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTACCTTCA  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTACCTTCA  1036

Query  719  GTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATAAATTT  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATAAATTT  1110

Query  793  TATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAATTAGC  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAATTAGC  1184

Query  867  TATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACTGGATA  940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACTGGATA  1258

Query  941  TGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTA  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCACCAGTA  1332

Query 1015  TTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCAC  1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTAGTCAC  1406

Query 1089  AGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGT  1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATTTTGGT  1480

Query 1163  ATTTCAGCAGAAAGACTTTCACAGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATACCAAT  1236
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATACCAAT  1554

Query 1237  GCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAG  1310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAG  1628

Query 1311  TGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGGAACAG  1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGGAACAG  1702

Query 1385  GTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACAGTAAC  1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACAGTAAC  1776

Query 1459  CTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATG  1532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAGGTATG  1850

Query 1533  GCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAG-------  1599
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 1851  GCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAGGACTCAG  1924

Query 1600  --CAACAGA-TGAAATTTAGTCTTACACCGAGACAGACTATTCA-CCTA--------------------GTTAA  1649
              ||..||| ||    |||   |||| .|||||     |||||| |.||                    .||||
Sbjct 1925  CCCAGGAGAGTG----TTA---TTAC-TCGAGA-----TATTCATCGTACATTTCCCGCACATGATTACTTTAA  1985

Query 1650  ATAT------------------GAA-GGGTCTATGAAGGTCTCCATGAC--ACCCTGT--------AACCAGCT  1694
            |.||                  ||| .|.||||| |||.|||.||.|.|  ||.||||        ||      
Sbjct 1986  AGATACTGGAGGAGATGGTCAAGAATCGCTCTAT-AAGATCTGCAAGGCCTACTCTGTGTATGATGAA------  2052

Query 1695  GCAATTTGACATTAG---------------------ACTTGATGTTCTG-ATTACT------TAT---------  1731
                   ||||||.|                     .||||.||  ||| ||||||      |||         
Sbjct 2053  -------GACATTGGGTACTGTCAAGGGCAGTCTTTTCTTGCTG--CTGTATTACTGCTGCATATGCCAGAGGA  2117

Query 1732  ------ACTTTTTGTTTTAGTTCCTTTCCTGAGCCTGAAT--TGTACAAATATG------------TCCTAAAA  1785
                  |.|.|.||||||.|         |||    .|||  |||||.|.||||            | |||.|.
Sbjct 2118  ACAAGCATTCTGTGTTTTGG---------TGA----AAATCATGTACGACTATGGTTTGAGAGACCT-CTACAG  2177

Query 1786  CACCAACTT-----------ATT-----------------AAGAGGCTTAATGCCTGT----------------  1815
            .|.||||||           |||                 .||||.| ||||||..|.                
Sbjct 2178  AAACAACTTCGAAGATCTTCATTGCAAATTCTACCAGTTGGAGAGAC-TAATGCAGGAACAGCTACCGGACCTG  2250

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2251  CATAGCCATTTTTCTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTTCTCACTCTTTTTACTGC  2324

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2325  CAAGTTCCCACTCTGCATGGTGTTCCACATCATTGACTTACTGCTTTGTGAGGGTTTGAACATAATCTTTCATG  2398

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2399  TAGCTTTGGCTCTCCTAAAGACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTT  2472

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2473  AGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAA  2546

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2547  AGTGGGTGTGTACACTGGCACTGAGCTGCAGTAGGATTTTTCCTTGGATAGTCTGGTCTGGAGCTGGGACAGCA  2620

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2621  GCTGCTGCTGTGGAAAGGCCAGCTGGCAAGATGATGGAAGAAATCTCCATTATGGTAGCCTATGACGCCCATGT  2694

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2695  TTTCAGCCAGCTGCACGATGAAGACTTCCTCACTAGTCTGGTGGCCATCAGCAAGCCCAGGTCTATGGTACCAA  2768

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2769  CCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATG  2842

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2843  GATAGATACAAGTTTGTATATTTGTAGGTAACTCCAGCTGTTGCATTTATACTGGGAATCTTCATAAGAAGCTG  2916

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2917  AGAGAAAGAGAGGGGAAAAAGAAAGTGGCTTTCTACTTTCAAAAATGAAACAAAAAGGAAAAATGGCAAAGTAC  2990

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2991  TGTTTTAGCTGTGCATGTCATATCCACAAAGACTTTTAGCAGGTGAACTGTTCCAAGACTGACACAAGGATGTT  3064

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 3065  TCAAACTTGCCTCTGTCTGTAGAAAATGTTAAAAATACCAACTCACTTGGAAGGAAAAATAAAAATCACAAAGG  3138

Query 1816  ----------------  1815
                            
Sbjct 3139  TATATTGAGCACAGTA  3154

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