Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11447
Subject:
XR_001748535.1
Aligned Length:
5773
Identities:
153
Gaps:
5620

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCACGGCCGGTTCCTCTTTACATAACGGCGCGGGGCGGCATGGGCCCGGGCCACCGCCTCCGCCCGGCTGCCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCGGACTGTCGCGGCCCGCGGTGGCGACGGCGGCCGCTGCAAAGTTTCCCCGGCGGCGGCGGCCCGGGGGCGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCCTCCCGCAACTGTCAAGCGCTGGCGGCGGAAATGATGAGGCGCTGGCCATTTTCCGAGCCCGGGTTTCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCTGAGCCCCGCTCGAGCGAGCCGCGAGCGAGGAGCCGGCGGGCGGGAGAGGACGCGCCCAGGGCGGGGGCCCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCGCCCCCTCGGGATTTCGAGGGCCCGGGGGCGCGCGACGCCATGGGCCGGCCGGGCCCAGAGCTCCTGTCTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGCTGGCCCGCCAGTACTGGCTGTTCGCCCGGGAGCATCCGCAGCACGCGCCGCTGCGCGCCGAGCTGGTGTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTGCAGTTCACCGACCTCTTCCAGCGCTACTTCTGCCGCGAGGTGCGCGACGGACGGGCGCCGGGCCGCGACT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACCGGGACACAGGCCGTGGGCCCCCAGCCAAGGCCGAGGCGTCCCCGGAGCCAGGCCCCGGCCCCGCCGCCCCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGCCTGCCCAAGGCCCGCAGCTCTGAGGAGCTGGCCCCGCCGCGGCCGCCCGGGCCCTGCTCCTTCCAGCACTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCGCCGCAGCCTCCGCCACATCTTCCGCCGCCGCTCGGCCGGGGAGCTGCCAGCGGCCCACACCGCTGCCGCCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCGGGACCCCCGGAGAGGCTGCTGAGACCCCCGCCCGGCCTGGCCTGGCCAAGAAGTTCCTGCCCTGGAGCCTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCCCGGGAGCCGCCACCCGAGGCGCTGAAGGAGGCGGTGCTGCGCTACAGCCTGGCCGACGAGGCCTCCATGGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGCGGGGCACGCTGGCAGCGCGGGAGGCTGGCGCTGCGCCGGGCCCCGGGCCCCGATGGCCCCGACCGCGTGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TGGAGCTCTTCGACCCACCCAAGTGGCCAGAGCCTGAGCTGTCCAGGCTGAGGTTTCGACTGAAGCAGGGGTTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCCTGCGCCCATGTGCCCACACGCTGCAACCTGGCTGGAGCCTCTGGCATAGGACACCCATACCACCAGTCTTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCACAAGAGGAAGGGGAGGGGCAAACCCCCTCCTGAGCAGATTCCCAACCGGAAGCAGCTGGCTCCTTGGCTGC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGAGTGCCCCAGCACAGGAAGCATCTGCAGGGGGGACTCCTGGGGAGACTATAGACAAACTCAGGCCTGGCTGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AAGAAAGAGCATCAGGAACAAGCCTTGAGTACCCCAACTTGGTCTCGTAGAGTTCAAGGCCCAAGCTACAAGCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCTTGCTCCAGCATCCAGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAACCTTTACACCTTTGTGCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAGGTGAAGGACCGGACAGACATCATCTTTGAGGTGGGAGACGAGCAGCAGCTGAATTCATGGATGGCTGAGC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCTCGGAGTGCACAGGCCGAGGGCTGGAGAGCACAGAAGCAGAGATGCATATTCCCTCAGCCCTAGAGCCTAGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ACGTCCAGCTCCCCAAGGGGCAGCACAGATTCCCTTAACCAAGGTGCTTCTCCTGGGGGGCTGCTGGACCCGGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTGCCAGAAGACGGACCATTTCCTGTCCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAAAGCAGCTC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGCTGGTTCAGCTGCAGGGCCCTGATGCTCATGGAGTGTTCCTGGTGCGGCAGAGCGAGACGCGGCGTGGGGAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TACGTGCTCACTTTCAACTTTCAGGGGATAGCCAAGCACCTGCGCCTGTCGCTGACAGAGCGGGGCCAGTGCCG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGTGCAGCACCTCCACTTTCCCTCGGTCGTGGACATGCTCCACCACTTCCAGCGCTCGCCCATCCCACTCGAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCGGCGCCGCCTGTGATGTCCGGCTCTCCAGCTACGTGGTAGTCGTCTCCCAACCACCAGGTTCCTGCAACACG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GTCCTCTTCCCTTTCTCCCTTCCTCACTGGGATTCAGAGTCCCTTCCTCACTGGGGTTCAGAGTTGGGCCTTCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCACCTTAGTTCTTCTGGCTGTCCCCGGGGGCTCAGCCCAGAGGGTCTCCCAGGGCGATCCTCACCCCCCGAGC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGATCTTCCACCTGGTGCCTTCGCCCGAAGAACTGGCCAACAGCCTGCAGCACCTGGAGCATGAGCCTGTGAAT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CGAGCCCGGGACTCGGACTACGAAATGGACTCATCCTCCCGGAGCCACCTGCGGGCCATAGACAATCAGTACAC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACCTCTCTGACCAGTGAGGAATTCCAGGCCTCAACAGCTGCCCTTGAGGAGCACAGGCAGAAGTGTGAACTTGT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GAATGTAATTGATCTTTCCTTCCTTCCAGAGAAAGATTTAAGGGACACTGTTAACTGCTCGTGCCAGTTTGGAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GTGACCCTTCTATTAGGCCTGTTGAAGGGCCCTCCTGTAGGTTTCATCTATCCACCTGGCTTTCTCCTTATTGT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTACAGATGTAGTTCTTGTTAGAGGATGCCGCTAGCTCCTGCCCGGGGTCCCTATGCCCAGTCCCCGTTACTCT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TAGAGAAAGGAGTTGGGGTGAGGGCCAGAGCTGGCAGTGGAAACTTGTTCTCTTTTTCACTGACACTGTCACAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CGGATGACAGACTTTCTACGGGGAGGAGGGGGGGATCATCAGGAAGCCCAGAACACTAACAAGCGGTTCTCCCA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCTACCGTCAGTCCACATGGCAGGTCTGCTGTGTCCACACCACAGATGACCACATCTAATCCTGCTTCTACTCT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CAGCTTTAGGACAAAAGCTCTGTCAGAGGCACAAGCTGAAGGTCAAAAATGATTTAAAACATTTTACCTCAGAC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TAATTTCTTTAAAGGATTCAGGTTCAAAACTTAACCACTGCTTATTTCAGTGCACTGTTTCAACTAACACCCAT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GCTATTTTTGTAGTCAGAAACAGCTATGCAAACCCTACCTAATTTACAGTCTGAGCCAGCATGCTGGCTTGTCT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ACTGCATCCTCGGGACAGTCACCTGCCACTGAGTGGCCACTGTCCTTCCTAAATGTCAAGAAGTGAAGTATGTC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ACCCTTTCAGGGAAATTCAGGCAATTACTGAAATAGGAGGGTGGCAAGAACAGTTCTATCCTGGTGCCTTACGA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  ATAAAAAACTGGATTCTGGTTTACAGCAGCTTTACAGTGATAGTTAAATTAACTGGGGCTAGGGGAAGAGCAAG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CAAAAAGGGAAGAAGGACTCCTAGGCCCTTTCTAGTAAATCCTTCAGCAACAAGGCTGGCTTGGTGCCCTCCAA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  GCATCTAATGGCTTATTAAATTATCCCACAAGTGGGTTTTAGGCTCCTTTTTTGAGCCAAAATGGAAGCTGGGA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  ATCTGGTGCCATAACTAATGAGAAACTCCTTTAATAGCCCACAATCAGTGTTCTGTTCTAGCTGGCTACTGCTT  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  CACTGGATTGAGAATCTATCTATCTCCTTGCACACATGGGCACACACAATCTCCACCATCCAGGGAGGTCCTGA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  AGTCAAATCTCTATCTATACAAGTGATACAATTCATAGGGGGCTGGCTCCTCCCAGAACCTGTCTGGAGGCTCA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  GAAACGGGGGCAGTGACAGTGGAGTCAGCTGCTCTTGGGTGCCAGCAGAGCCATTCAGTACAACCCCCAGGCTC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  ACAGCAGTGGCTTCTAGGAAACTGGGAGTTTAGATCAGCTTTACAGATACATCGATCAGAGGCTAAAATGAAAC  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  CTCAGCCTAAAACTCATAGGACTGACTGCCTGGGAGGAGGGTTAGGTCTGCTTCTTCCACTTATACTTAGTCTC  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  TGTGCTCCAAGAGGTCAAATTTTTGCTTCTAGAATTTCCTTGGGGTCTTTCAGAGGGTGGGGGAACAAACCCCT  4070

Query    1  ----------------------------ATGGAGTTTCTCTTGTCAACCGGGCTGGAGTGCAGTGGTGCAATCT  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071  ATGCACTTTTCTTTTTTTTTTTTTTGAGATGGAGTTTCTCTTGTCAACCGGGCTGGAGTGCAGTGGTGCAATCT  4144

Query   47  TGGCTCACTGCAACCTCCACCTTCCTGGTTCAAGCGATTCTGCCTCGACCTCTCAAGTAGCTGGGATTACAAGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145  TGGCTCACTGCAACCTCCACCTTCCTGGTTCAAGCGATTCTGCCTCGACCTCTCAAGTAGCTGGGATTACAAGC  4218

Query  121  ACCAGCCACCATGCCTGGCTAATTTTGTATTTT-----------------------------------------  153
            |||||||||||||||||||||||||||||||||                                         
Sbjct 4219  ACCAGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTC  4292

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4293  GAATGTCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGCGAGCCACCGCGC  4366

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4367  CCAGCCTACACCACTTTTAGTACCAACACTCTTGGGTGATTTCATGGACCCTAAAGCAGACCTGACACTGATCC  4440

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4441  AGATTTGCAGTCCATTTTTAAGGACACCTGTCTTTATTTCCTCAAAGTCAAGCAGCTTTCTCTGGAAAATGAAT  4514

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4515  GCTAATTAGTGTGAACCAAAAGAGTAAGTAAGAGTCTGAAGTTTTTTTAAAGGAGAAAGCTTATTATGGAAAGT  4588

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4589  CACTGGTCCTCCCCTCCGCACAGGAAAGGTACCCAGTAGATAATGAACCAAATTAAGTTCCCTCCCTCCAGCCA  4662

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4663  GAAGTTAAACATCTGGGATATGACGTCTTCATGCCAGGGGCACTCATTTCTTAGCAGCCTCTCTACATACATCT  4736

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4737  CTCAGGTGGTGCCAAGAGGCACACCAGGTAGAGCAAACTTAGCAGCTCTGACTAACAGGCTGCAAAGTGCAAGT  4810

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4811  TCAGATTCTGTGGCAGAGATTTGGAAGGCACCCACCTCCAGACTGCTTCCCGTCCAAGTTACCAGGACAGCTCA  4884

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4885  AAAACATGCTGACAGAAAACTCCCATGGCTCTAGGAAGAAGTGACACTAAGCCAACACCTTTCTTTATGTGGGA  4958

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4959  GCAGAATCAGCTGATGAAGGGGTGGGCAGCAGTGTGGGGCAGGCACCCCACTGGCTGCAGCTAGCCCACCATAG  5032

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5033  GCACAGCACATCCCACCACTCTCCTTCCAGTCCTGACCAGGCCCCAGCCGGCAACTTCTACCGAGAGCCATGGC  5106

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5107  TCAACACCAAACTGGACAGTAGACATCATGATCCCTCCAGTTAGCTCTAATTACAGACCCCACCAGTACAGCTT  5180

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5181  GACAGCTCCCGGCACCATCCCTTCCTTCATCTGACTTATTGAACTTTTACAAACTAACAGTCACCAGCACCAAA  5254

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5255  GAATTAAGTCAACTAACCTGCCTTGAATTTTAGACCAGCAATCCATATGGCTTTATCTGGTATAAATCTTCTGC  5328

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5329  CTTTGATCATTTCTGGACCGTAGGAAAAAGGAATAGCAATCATTAAAATCTTGGGCCAGAGAACACTATTTTTA  5402

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5403  CATAACAGTTTCTTAACCTAAAGTCAAGGCCTTGGACTCTTCCCTGAGGGTTGCCTGAGATTCCTTCATGCTTT  5476

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5477  CTATTCAGGACTAAGTCCCTTACTGCAAATGTGTTAGCTCTAACATCTCCCACAAGCTAGAGGAACTTGCGAGT  5550

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5551  ATATTAACAAGGACACATCTGACATCCTGTGTTTGGTTAGAATATACAGCACATTGTGATAACATAAAGTGGAT  5624

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5625  TCATCTTGTATCATTATAGGCAGAAGGTATTTGGCAAATTTTTATGTATTGTTTTATGTACTGTACAAGTAACT  5698

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5699  TATTCTTGAATAATGCAAATTTTGCTATAATGTACAAATTGCTATATGTGAATTAAAAAGTTTTCAGAATCTTG  5772

Query  154  -  153
             
Sbjct 5773  A  5773

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