Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11497
- Subject:
- NM_001286279.1
- Aligned Length:
- 2489
- Identities:
- 1269
- Gaps:
- 1189
Alignment
Query 1 ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA 74
Query 75 AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG 148
Query 149 ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT 222
Query 223 TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG 296
Query 297 CCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAGGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAGGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAA 370
Query 371 GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC 444
Query 445 CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC 518
Query 519 CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC 592
Query 593 AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC 666
Query 667 CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA 740
Query 741 AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG 814
Query 815 AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG 888
Query 889 TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG 962
Query 963 GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGC 1036
Query 1037 TACAACTAGAGGATGACCAGGGTGTGAATTTGGGACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TACAACTAGAGGATGACCAGGGTGTGAATTTGGGACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGG 1110
Query 1111 ACCTATGATCCCAAAATACGACTGAAGACCCTTGCGGCCCTAGTGGACCACTGCCAAGGAAGGAAAGGAGGTGA 1184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACCTATGATCCCAAAATACGACTGAAGACCCTTGCGGCCCTAGTGGACCACTGCCAAGG--------------- 1169
Query 1185 GCTGGCCTCAGCTGTCCACGCCTACACAAAAACAGGAGACCCGTACATGCGGTCTCTGGTGCA-GCACATC--- 1254
|| |||||| ||| |||....|| ||||.||
Sbjct 1170 -------TC------CCACGC---------------------------GCG---TCTTTCCCACGCACGTCTTT 1200
Query 1255 CTCAGCCTCGTGTCTCATCCTGTTTTGAGCTTCCTGTAC-CGCTGGATATATGATGGGGAGCTTGAGGAC---- 1323
|.|| |.||.|.|| |||| | |||..|| |||....||
Sbjct 1201 CCCA--CGCGCGACT---------------TTCC----CACGCGCGA--------------CTTTCCCACGCGC 1239
Query 1324 -ACTTAC-----CACGAATTTTTTGTAGCATCAGATCCAACAGTTAAAACAGATCGACTGTGGCACGACAAGTA 1391
||||.| ||||..|| |||.|| |..||.||.|..|||| |..||.
Sbjct 1240 GACTTTCCCATGCACGTCTT---------------TCCCAC----------GCGCGTCTTTCCCACG-CGCGTC 1287
Query 1392 TACTTTGAGGAAATCGATGATTCCTTCGTTTATGACGATGGATCAGTCTAGGAAGGTCCT--TTTGATAGGAAA 1463
| ||.|.||| |||.||| ||| ||| || ||||
Sbjct 1288 T-------GGCACTCG-------CTTTGTT------------TCA------GAA----CTCGTTTG-------- 1317
Query 1464 ATCAATAAATTTCTTGCACCAAGTTTGTCATGATCAGACTCCCACTACAAAGATGATAGCTGTGACCAAGTCTG 1537
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 1538 CAGAGTCACCCCAGGACGCTGCAGACCTATTCACAGACTTGGAAAATGCATTTCAGGGGAAGATTGATGCTGCT 1611
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 1612 TATTTTGAGACCAGCAAATACCTGTTGGATGTTCTCAATAAAAAGTACAGCTTGCTGGACCACATGCAGGCAAT 1685
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 1686 GAGGCGGTACCTGCTTCTTGGTCAAGGAGACTTTATAAGGCACTTAATGGACTTGCTAAAACCAGAACTTGTCC 1759
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 1760 GTCCAGCTACGACTTTGTATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCACCAACGCACAG 1833
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 1834 TTTGACAGTCCTGAGATCCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGACACTGGATGGGA 1907
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 1908 TGTCTTCAGCCTCGATTATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTATGAGCCACTACC 1981
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 1982 TAAGAGTATTTAACTTCCTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGAAGGGACACATG 2055
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 2056 TGCAATGCAAAGCTCCTGAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATTTTGGCCTCTGA 2129
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 2130 GATGGTCCATTTCATTCATCAGATGCAGTATTACATCACATTTGAGGTGCTTGAATGTTCTTGGGATGAGCTTT 2203
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 2204 GGAACAAAGTCCAGCAGGCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAGACACCATCATC 2277
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 2278 TCCCGCTGCCTGCTGGACAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGATCAAATTATTGA 2351
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 2352 ACTTCAGAATGCTCAAGATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACAGTTTGAAGAGA 2425
Sbjct 1318 -------------------------------------------------------------------------- 1317
Query 2426 AAAAGAAACAGCGTGAAATTGAGGTTGAGATGTGCCTATACTGCGTT 2472
Sbjct 1318 ----------------------------------------------- 1317
