Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11497
Subject:
XM_006508801.2
Aligned Length:
2727
Identities:
1068
Gaps:
1491

Alignment

Query    1  ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAGGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGC  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  TACAACTAGAGGATGACCAGGGTGTGAATTTGGGACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGG  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  ACCTATGATCCCAAAATACGACTGAAGACCCTTGCGGCCCTAGTGGACCACTGCCAAGGAAGGAAAGGAGGTGA  1184
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1185  GCTGGCCTCAGCTGTCCACGCCTACACAAAAACAGGAGACCCGTACATGCGGTCTCTGGTGCAGCACATCCTCA  1258
                                                          |||..|||.||||||||||||||.||.|
Sbjct    1  ----------------------------------------------ATGAAGTCCCTGGTGCAGCACATTCTGA  28

Query 1259  GCCTCGTGTCTCATCCTGTTTTGAGCTTCCTGTACCGCTGGATATATGATGGGGAGCTTGAGGACACTTACCAC  1332
            ||.|.||||||||.|||||..||||||||||.|||||.||||||||||||||||||.|.|||||||||||||||
Sbjct   29  GCTTGGTGTCTCACCCTGTCCTGAGCTTCCTCTACCGGTGGATATATGATGGGGAGTTGGAGGACACTTACCAC  102

Query 1333  GAATTTTTTGTAGCATCAGATCCAACAGTTAAAACAGATCGACTGTGGCACGACAAGTATACTTTGAGGAAATC  1406
            |||||||||||.||.||.|||||||||||||||||.||.||.||.|||||||||||||||||..|||||||.||
Sbjct  103  GAATTTTTTGTGGCGTCTGATCCAACAGTTAAAACTGACCGTCTATGGCACGACAAGTATACCCTGAGGAAGTC  176

Query 1407  GATGATTCCTTCGTTTATGACGATGGATCAGTCTAGGAAGGTCCTTTTGATAGGAAAATCAATAAATTTCTTGC  1480
            .|||||.||.||.||.||.||||||||.|||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  177  AATGATCCCCTCCTTCATTACGATGGACCAGTCTAGGAAGGTCCTTTTGATAGGAAAGTCAATAAATTTCTTGC  250

Query 1481  ACCAAGTTTGTCATGATCAGACTCCCACTACAAAGATGATAGCTGTGACCAAGTCTGCAGAGTCACCCCAGGAC  1554
            ||||||||||||||||||||||.||.||||||||.||||||||.|||||.|||||.|||||||||||||..|||
Sbjct  251  ACCAAGTTTGTCATGATCAGACACCTACTACAAAAATGATAGCAGTGACGAAGTCGGCAGAGTCACCCCGTGAC  324

Query 1555  GCTGCAGACCTATTCACAGACTTGGAAAATGCATTTCAGGGGAAGATTGATGCTGCTTATTTTGAGACCAGCAA  1628
            |||||.||..|||||||||||||.|||||.||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct  325  GCTGCGGATTTATTCACAGACTTAGAAAACGCATTTCAAGGGAAAATTGATGCTGCTTATTTTGAGACCAGCAA  398

Query 1629  ATACCTGTTGGATGTTCTCAATAAAAAGTACAGCTTGCTGGACCACATGCAGGCAATGAGGCGGTACCTGCTTC  1702
            |||.|||||||||||.|||||||||||||||||..|||||||.|||||||||||.|||.|.|||||||||||.|
Sbjct  399  ATATCTGTTGGATGTCCTCAATAAAAAGTACAGTCTGCTGGAACACATGCAGGCCATGCGACGGTACCTGCTGC  472

Query 1703  TTGGTCAAGGAGACTTTATAAGGCACTTAATGGACTTGCTAAAACCAGAACTTGTCCGTCCAGCTACGACTTTG  1776
            ||||.|||||||||||.|||.|||||||||||||.|||||.||||||||||||||.||.|||||.||.||||||
Sbjct  473  TTGGCCAAGGAGACTTCATACGGCACTTAATGGATTTGCTCAAACCAGAACTTGTTCGGCCAGCAACAACTTTG  546

Query 1777  TATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCACCAACGCACAGTTTGACAGTCCTGAGAT  1850
            |||||||||||||||||.||.|||||.|||||.|||||.|||||||||||.||.|||||||||||.||.|||||
Sbjct  547  TATCAGCATAACTTGACGGGGATTCTTGAAACTGCTGTGAGAGCCACCAATGCTCAGTTTGACAGCCCGGAGAT  620

Query 1851  CCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGACACTGGATGGGATGTCTTCAGCCTCGATT  1924
            |||....|||||.||.|||.|||||||||||||||||||.|||||||||||.|||||||||||||||||.||||
Sbjct  621  CCTTAAGAGGCTCGATGTGAGGCTGCTGGAGGTCTCTCCTGGTGACACTGGGTGGGATGTCTTCAGCCTGGATT  694

Query 1925  ATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTATGAGCCACTACCTAAGAGTATTTAACTTC  1998
            |.||.||.||.||||||||.||.||||||||.||.|||||.||.||||||||||||||.|||||.|||||||||
Sbjct  695  ACCACGTCGATGGACCAATCGCCACTGTGTTCACACGAGAGTGCATGAGCCACTACCTGAGAGTGTTTAACTTC  768

Query 1999  CTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGAAGGGACACATGTGCAATGCAAAGCTCCT  2072
            ||.||||||||.|||||.|||||.|||||||||||||||||.|||||.||.|||||||||||.||.|||||.||
Sbjct  769  CTGTGGAGGGCCAAGCGCATGGAGTACATCCTCACTGACATCCGGAAAGGGCACATGTGCAACGCGAAGCTGCT  842

Query 2073  GAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATTTTGGCCTCTGAGATGGTCCATTTCATTC  2146
            |||.||||||||.||||||||.||||||||.||||||||.|||||..|||||||.||||||||.||.|||||.|
Sbjct  843  GAGGAACATGCCGGAGTTCTCTGGGGTGCTTCACCAGTGCCACATCCTGGCCTCAGAGATGGTGCACTTCATCC  916

Query 2147  ATCAGATGCAGTATTACATCACATTTGAGGTGCTTGAATGTTCTTGGGATGAGCTTTGGAACAAAGTCCAGCAG  2220
            |.|||||||||||.||||||||.||||||||.||.||.||.||.|||||||||||.|||||||.|||.||||||
Sbjct  917  ACCAGATGCAGTACTACATCACCTTTGAGGTTCTCGAGTGCTCCTGGGATGAGCTGTGGAACAGAGTGCAGCAG  990

Query 2221  GCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAGACACCATCATCTCCCGCTGCCTGCTGGA  2294
            ||||||||..||||.|||||.|||||.||||||||||.||||.|..|||||||||.|||||||||.||.|||||
Sbjct  991  GCCCAGGACCTGGACCACATTATTGCAGCACACGAGGCGTTCCTGAACACCATCACCTCCCGCTGTCTCCTGGA  1064

Query 2295  CAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGATCAAATTATTGAACTTCAGAATGCTCAAG  2368
            .||..|||||||||..||||||||.|||||.|||||.||||||||.|||||.|||||||||||||||||.||.|
Sbjct 1065  TAGCAACTCCAGGGTGCTTTTAAACCAACTGAGAGCCGTGTTTGACCAAATCATTGAACTTCAGAATGCCCAGG  1138

Query 2369  ATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACAGTTTGAAGAGAAAAAGAAACAGCGTGAA  2442
            |.|..||.||||||||.||||||||.||..|||||||.||..|.||||||||||||||||||||||||||||||
Sbjct 1139  ACGTGATGTACAGAGCAGCTCTGGAGGAGCTGCAGAGGCGTCTGCAGTTTGAAGAGAAAAAGAAACAGCGTGAA  1212

Query 2443  ATTGAG-----GTTGAGATGTGCCTATACTGCGTT---------------------------------------  2472
            ||||||     ||.|.|| |||     ||||||..                                       
Sbjct 1213  ATTGAGGGCCAGTGGGGA-GTG-----ACTGCGGCAGAGGAAGAGGAGGAGAACAAGAGGATCCGAGAATTCCA  1280

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 1281  GGACTCCATACCAAAAATGTGCTCACAGTTGCGAATATTGACGCACTTCTACCAGGGTGTGGTGCAGCAGTTTC  1354

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 1355  TGGTGTTACTCACGACCAGCTCTGATGAAAGTCTCCAGTTTCTCAGCTTCAGATTGGACTTCAACGAACATTAC  1428

Query 2473  ---------------------------------------------------------------  2472
                                                                           
Sbjct 1429  AAAGCCAGAGAACCCAGGCTCCGGGTCTCTCTGGGCAGTAGGGGGCGGCGCAGTTCCCACACG  1491

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.