Nucleotide Global Alignment

Description

• Query: ccsbBroad304_11497
• Subject: XR_001749455.2
• Aligned Length: 4104
• Identities: 2468
• Gaps: 1633

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATTGTGGGAAGCGCCCGCGCTTTCGGCGGGTTCCGTTAAAATGGCGCCCTGGTGGCCGGCGGCGCCCGCGCCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCTGTCAGGAGCAGGGAGCTTGCGGGGCGCAGGAAGGGCGCGGGCCGCGGTCCCTGCGCGTGCGGCGGCAGT  148

Query    1  -----------------------------------------ATGGCGACCCCGGACCAGAAGTCGCCGAACGTT  33
                                                     |||||||||||||||||||||||||||||||||
Sbjct  149  GGCGGCTCTGCCCGGACCACCGTGCACGGCTCCGGGCGAGGATGGCGACCCCGGACCAGAAGTCGCCGAACGTT  222

Query   34  CTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGAAGCTGATGTAGCCCAGCAGTTCCAGTATGCTGT  107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGAAGCTGATGTAGCCCAGCAGTTCCAGTATGCTGT  296

Query  108  GCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAGATGAATTTTTAGTAGCTGAAAAAATCAAGAAAG  181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAGATGAATTTTTAGTAGCTGAAAAAATCAAGAAAG  370

Query  182  AGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTTTCAGAACTCCACAGAAAACTTCATTCACAGGGA  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTTTCAGAACTCCACAGAAAACTTCATTCACAGGGA  444

Query  256  GTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAGCCTCAGTGAGGACCCACGCAGGCAGCCAAGCAA  329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAGCCTCAGTGAGGACCCACGCAGGCAGCCAAGCAA  518

Query  330  GGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAAGAGATGCCCACTCAACCCCTTACTACTATGCCA  403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAAGAGATGCCCACTCAACCCCTTACTACTATGCCA  592

Query  404  GGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCCCAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGC  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCCCAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGC  666

Query  478  AGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCCCGCGCCTGCGCCACAATCTCTCCTCCCAGGACA  551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCCCGCGCCTGCGCCACAATCTCTCCTCCCAGGACA  740

Query  552  GTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGCAGTTGGGGTCACGACTCGCATGGACTTTAACTG  625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGCAGTTGGGGTCACGACTCGCATGGACTTTAACTG  814

Query  626  CAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTCCCCAGTGCTGTGTCTCGCAACATGACAAGGTCC  699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTCCCCAGTGCTGTGTCTCGCAACATGACAAGGTCC  888

Query  700  AGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGAAGCAGCTCTGGTAAGGGACATTTTGTACGTCTT  773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGAAGCAGCTCTGGTAAGGGACATTTTGTACGTCTT  962

Query  774  TCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTGAAAATTGTTACAAAGTAGAAGGAAAGGCAAATC  847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTGAAAATTGTTACAAAGTAGAAGGAAAGGCAAATC  1036

Query  848  TAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAGTTGGGATGGTTGCATAATAAAATCAGAAGATAC  921
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAGTTGGGATGGTTGCATAATAAAATCAGAAGATAC  1110

Query  922  ACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGGGCAGAGCTTTTGTGCTGCCTTGCACCAGGAACT  995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGGGCAGAGCTTTTGTGCTGCCTTGCACCAGGAACT  1184

Query  996  CAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGCTACAACTAGAGGATGACCAGGGTGTGAATTTGG  1069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGCTACAACTAGAGGATGACCAGGGTGTGAATTTGG  1258

Query 1070  GACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGGACCTATGATCCCAAAATACGACTGAAGACCCTT  1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGGACCTATGATCCCAAAATACGACTGAAGACCCTT  1332

Query 1144  GCGGCCCTAGTGGACCACTGCCAAGGAAGGAAAGGAGGTGAGCTGGCCTCAGCTGTCCACGCCTACACAAAAAC  1217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GCGGCCCTAGTGGACCACTGCCAAGGAAGGAAAGGAGGTGAGCTGGCCTCAGCTGTCCACGCCTACACAAAAAC  1406

Query 1218  AGGAGACCCGTACATGCGGTCTCTGGTGCAGCACATCCTCAGCCTCGTGTCTCATCCTGTTTTGAGCTTCCTGT  1291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGGAGACCCGTACATGCGGTCTCTGGTGCAGCACATCCTCAGCCTCGTGTCTCATCCTGTTTTGAGCTTCCTGT  1480

Query 1292  ACCGCTGGATATATGATGGGGAGCTTGAGGACACTTACCACGAATTTTTTGTAGCATCAGATCCAACAGTTAAA  1365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ACCGCTGGATATATGATGGGGAGCTTGAGGACACTTACCACGAATTTTTTGTAGCATCAGATCCAACAGTTAAA  1554

Query 1366  ACAGATCGACTGTGGCACGACAAGTATACTTTGAGGAAATCGATGATTCCTTCGTTTATGACGATGGATCAGTC  1439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ACAGATCGACTGTGGCACGACAAGTATACTTTGAGGAAATCGATGATTCCTTCGTTTATGACGATGGATCAGTC  1628

Query 1440  TAGGAAGGTCCTTTTGATAGGAAAATCAATAAATTTCTTGCACCAAGTTTGTCATGATCAGACTCCCACTACAA  1513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TAGGAAGGTCCTTTTGATAGGAAAATCAATAAATTTCTTGCACCAAGTTTGTCATGATCAGACTCCCACTACAA  1702

Query 1514  AGATGATAGCTGTGACCAAGTCTGCAGAGTCACCCCAGGACGCTGCAGACCTATTCACAGACTTGGAAAATGCA  1587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGATGATAGCTGTGACCAAGTCTGCAGAGTCACCCCAGGACGCTGCAGACCTATTCACAGACTTGGAAAATGCA  1776

Query 1588  TTTCAGGGGAAGATTGATGCTGCTTATTTTGAGACCAGCAAATACCTGTTGGATGTTCTCAATAAAAAGTACAG  1661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TTTCAGGGGAAGATTGATGCTGCTTATTTTGAGACCAGCAAATACCTGTTGGATGTTCTCAATAAAAAGTACAG  1850

Query 1662  CTTGCTGGACCACATGCAGGCAATGAGGCGGTACCTGCTTCTTGGTCAAGGAGACTTTATAAGGCACTTAATGG  1735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CTTGCTGGACCACATGCAGGCAATGAGGCGGTACCTGCTTCTTGGTCAAGGAGACTTTATAAGGCACTTAATGG  1924

Query 1736  ACTTGC--------------------------------------------------------------------  1741
            ||||||                                                                    
Sbjct 1925  ACTTGCTAAAAGTTAAATGTATGTCCTTCTCCACAAGTTCTGGACCAGAGCCTGCTGTGCTTCTAGGTCTAGAG  1998

Query 1742  --------------------------------------------------------------------------  1741
                                                                                      
Sbjct 1999  ACAGTGCAGACCCCGGCCCAGGCAGCGTGAGCCTGGGCATGAGCATCCCAGGGGTCCACAGCCTGGGCCTGGAG  2072

Query 1742  ------------------------------------------------------------TAAAACCAGAACTT  1755
                                                                        ||||||||||||||
Sbjct 2073  ATTTTCACCCAAGTGTTTAGAAGAATGAAACTTCTTTTCTGGTGTTCCTTTTAGGACACTTAAAACCAGAACTT  2146

Query 1756  GTCCGTCCAGCTACGACTTTGTATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCACCAACGC  1829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GTCCGTCCAGCTACGACTTTGTATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCACCAACGC  2220

Query 1830  ACAGTTTGACAGTCCTGAGATCCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGACACTGGAT  1903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  ACAGTTTGACAGTCCTGAGATCCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGACACTGGAT  2294

Query 1904  GGGATGTCTTCAGCCTCGATTATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTATGAGCCAC  1977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GGGATGTCTTCAGCCTCGATTATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTATGAGCCAC  2368

Query 1978  TACCTAAGAGTATTTAACTTCCTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGAAGGGACA  2051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TACCTAAGAGTATTTAACTTCCTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGAAGGGACA  2442

Query 2052  CATGTGCAATGCAAAGCTCCTGAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATTTTGGCCT  2125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  CATGTGCAATGCAAAGCTCCTGAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATTTTGGCCT  2516

Query 2126  CTGAGATGGTCCATTTCATTCATCAGATGCAGTATTACATCACATTTGAGGTGCTTGAATGTTCTTGGGATGAG  2199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  CTGAGATGGTCCATTTCATTCATCAGATGCAGTATTACATCACATTTGAGGTGCTTGAATGTTCTTGGGATGAG  2590

Query 2200  CTTTGGAACAAAGTCCAGCAGGCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAGACACCAT  2273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  CTTTGGAACAAAGTCCAGCAGGCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAGACACCAT  2664

Query 2274  CATCTCCCGCTGCCTGCTGGACAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGATCAAATTA  2347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  CATCTCCCGCTGCCTGCTGGACAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGATCAAATTA  2738

Query 2348  TTGAACTTCAGAATGCTCAAGATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACAGTTTGAA  2421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  TTGAACTTCAGAATGCTCAAGATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACAGTTTGAA  2812

Query 2422  GAGAAAAAGAAACAGCGTGAAATTGAG-----GTTGAGATGTG-------------------------------  2459
            |||||||||||||||||||||||||||     ||.|.|| |||                               
Sbjct 2813  GAGAAAAAGAAACAGCGTGAAATTGAGGGCCAGTGGGGA-GTGACGGCAGCAGAGGAAGAGGAGGAAAATAAGA  2885

Query 2460  --------------------CCTATAC--------TGC-----GTT----------------------------  2472
                                .||||||        |||     |||                            
Sbjct 2886  GGATTGGAGAATTTAAAGAATCTATACCAAAAATGTGCTCACAGTTGCGAATATTGACCCATTTCTACCAGGGT  2959

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2960  ATCGTGCAGCAGTTTTTGGTGTTACTGACGACCAGCTCTGACGAGAGTCTTCGGTTTCTTAGCTTCAGGCTGGA  3033

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3034  CTTCAACGAGCATTACAAAGCCAGGGAGCCCAGGCTCCGTGTGTCTCTGGGTACCAGGGGGCGGCGCAGCTCCC  3107

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3108  ACACGTGAAGCTCGCGGTCCTCCCAGGGAGCTGCGGGTGATGTTCGTTGCACTGCTAGACACGAAATTCCCATT  3181

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3182  GACGTCCTGCAGGAACTGCATGCTGCAGGTGTCCTGCCCTTCCGCCCACGAGTGCGCCATGTTTCAGCGGAGCG  3255

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3256  GCGTGTGGGAGAAGCCACGTCGTGTTTCACATGTCGGAGTCGAATGCATTTGTAAATCCCTAAGTCAAGTAGGC  3329

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3330  TGGCTGCACTGTTCACATTTGTCTCTAAAAGTCTTCATCGCTAAAAGATACCATAATTTGCTGAGGCTTCTTAA  3403

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3404  GCTTTCTATGTTATAATTTATATTTGTCACTTTAAAAAATCCATTTCTTTTAGAAAAAATTAGGGTGATAGGAT  3477

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3478  ATTCATTAGTTAAGATGGTAACGTCATTGCTATTTTTTTAACATCCTCTTTAGAGGTAATTTTTGTTAACATAA  3551

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3552  CCAAAAATTAAATTGAAACAAAATGTCCCAACTAAGAAAATATATAGAGCATTTTATTTTTTTTTAGTGTTGTA  3625

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3626  AAATATTAACCTCTGTGAGATCCTTTGTATCTTAATGCATTACCTTTACACATATTTATTCTTATTTTCTCTCC  3699

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3700  TTTCAGAGTTTACATTTTTATATTTAATTTACTATTTCAGATTTTTAAAATAGTATAGAAAAAAGTAGGAGTGA  3773

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3774  TAGAGAACAAAAATACTCTTATACAGTGCAACCCAAATACCGCGAATGCATCAGCTAAAGCAGCGTGTAAATAG  3847

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3848  GAGTGACGAGAAAGTTAATGGAGTATTTTATTTTCAAAGTTCCTGATAAGCATTGGAAAGAAATCGACATGGAT  3921

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3922  AATGAAGATTTCCTTTTTCCTTGCCTATTTTTTCATTGTAAATATTTATATACTACTGACCAAGATGTTGGGGT  3995

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3996  GGGGGGGATTGTTTTTTGTAAAAATGTCATTATCAGGTCACATAAATCTGCCTTTATGTTGCATAAGTGAAAAT  4069

Query 2473  ----------------------------------  2472
                                              
Sbjct 4070  TTAGAAAATTAAAAGCAATTATCTTTCAGATGCA  4103