Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11568
Subject:
NM_001145862.2
Aligned Length:
2128
Identities:
709
Gaps:
1409

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTGGTGGGGGGGCCGGGGCCAGAGTTTCAACATTGCCCCCCAGAAGGAGGAGCCAGAGATGGGGTCTGTCCA  74

Query    1  ----------ATGCCGGAGCCCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCCCAGGGGAGC  64
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GGAAAATAGGATGCCGGAGCCCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCCCAGGGGAGC  148

Query   65  AGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGAACCCTGATCTGTACCAAC  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGAACCCTGATCTGTACCAAC  222

Query  139  TTTAGGGTCACCTTCCAGCCCTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAACAGTGAATACGATTTTGC  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTTAGGGTCACCTTCCAGCCCTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAACAGTGAATACGATTTTGC  296

Query  213  CCTGGTCAACATTGGACGATTAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGC  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCTGGTCAACATTGGACGATTAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGC  370

Query  287  ATAAATTTATCCCTGAGGAGATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAGGCTGGA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATAAATTTATCCCTGAGGAGATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAGGCTGGA  444

Query  361  GGCCTAGAGCCTCAGGCTTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGCCCAACA  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGCCTAGAGCCTCAGGCTTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGCCCAACA  518

Query  435  GTATTCGGGGATAACCCTGAGCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCATGGAGA  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GTATTCGGGGATAACCCTGAGCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCATGGAGA  592

Query  509  CAGCGGAAGACTGGGAGACTGAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAACGAGAGG  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAGCGGAAGACTGGGAGACTGAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAACGAGAGG  666

Query  583  TTCGACGTAGCCACCAGCCTCCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAGGAGAGC  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTCGACGTAGCCACCAGCCTCCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAGGAGAGC  740

Query  657  ATTTGGCCACTTTCATCAGGGCCGTGGACCGGTCAGTGTGATGG--------TTAGGGTAATG---------GC  713
            |||||||||||||||||||||||||||||||..| .|||..|||        |..|||.|.||         ||
Sbjct  741  ATTTGGCCACTTTCATCAGGGCCGTGGACCGCGC-TTGTCCTGGCATCACCCTGGGGGCAGTGATCTTCTCCGC  813

Query  714  TGTGGAT-------------------------------------------------------------------  720
            ||||||.                                                                   
Sbjct  814  TGTGGAGGCTTCTATACAGCCAGTGACCCTAACAAGGAGGATATCAGAGCAGTGGAGTTGATGCTCCAGGCTGG  887

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct  888  GCATTCAGATGTTGTCCTGGTAGACACTATGGATGAGCTGCCCAGCCTTGCAGATGTCCAACTTGCCCACCTGA  961

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct  962  GGCTGAGGGCCCTCTGCCTGCCTGATTCATCTGTAGCTGAGGATAAATGGCTTTCAGCCCTGGAAGGAACACGA  1035

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1036  TGGCTGGACTATGTCAGGGCTTGTCTTCGAAAGGCCAGTGACATTTCAGTATTAGTGACATCCAGGGTTCGTTC  1109

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1110  TGTAATACTTCAAGAGCGCGGTGATCGTGATCTCAATGGCCTCCTCTCTTCACTCGTCCAGCTGCTTTCAGCCC  1183

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1184  CCGAAGCCCGAACACTGTTTGGCTTCCAATCACTAGTACAGCGAGAGTGGGTGGCAGCTGGACATCCCTTCCTG  1257

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1258  ACTCGGCTTGGGGGAACTGGGGCCAGTGAAGAGGCTCCGGTGTTTCTCCTCTTCCTTGATTGTGTCTGGCAGCT  1331

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1332  CCTCCAGCAGTTTCCAGCTGATTTTGAATTCTCTGAGTTTTTCCTTCTTGCTCTTCATGACAGTGTCAGGGTTC  1405

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1406  CTGACACCCTTACCTTCCTGAGAAATACCCCCTGGGAGCGCGGAAAGCAGAGCGGACAGTTAAACTCCTATACA  1479

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1480  CAAGTCTACACCCCAGGATACTCCCAGCCTCCAGCTGGGAACTCTTTTAACCTGCAGCTGTCTGTCTGGGACTG  1553

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1554  GGATTTACGTTATAGCAATGCACAGATACTACAATTCCAGAATCCTGGCTATGACCCAGAACACTGTCCAGATT  1627

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1628  CCTGGCTCCCTAGACCACAGCCAAGCTTCATGGTTCCTGGACCCCCCAGTTCTGTGTGGCTCTTCTCTAGAGGA  1701

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1702  GCATTGACCCCCCTGAATCAGCTCTGTCCTTGGCGGGACAGTCCTTCCCTGCTGGCAGTCTCTTCTCGTTGGCT  1775

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1776  CCCTCGACCTGCTATCTCCTCTGAAAGCCTGGCTGACCAGGAATGGGGTCTCCCCTCACATTGGGGAGCTTGCC  1849

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1850  CTTTACCTCCAGGGCTGCTGCTGCCTGGGTATCTGGGACCCCAGATCAGGCTCTGGAGACGCTGCTACCTGAGG  1923

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1924  GGAAGGCCTGAGGTCCAGATGGGCCTCTCAGCTCCCACAATCTCTGGCCTCCAGGATGAGCTATCCCATCTTCA  1997

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1998  GGAGTTATTACGGAAATGGACACCAAGAATATCTCCTGAGGATCACTCCAAGAAAAGAGATCCACATACCATTC  2071

Query  721  --------------------------------------------------------  720
                                                                    
Sbjct 2072  TCAATCCCACTGAAATTGCTGGCATTCTCAAAGGCAGGGCAGAGGGGGATCTGGGG  2127

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