Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11568
Subject:
XR_002959066.1
Aligned Length:
2762
Identities:
587
Gaps:
2165

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGCTGGGCTGGACACACCTTTCCAAGGACCCCCAAACTCTGCTCCGTGCACGTCAAATGCTCCTTTCCCTTGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCCAACCCCCTACCCCTCTCCCTAACACCCCTCTTCTCAACAAGACTCAGCCTCTCCCCGAGGTGGGTGAGCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCTTGAGGTTTCCCACCCTTAACTGCTGTGTCCCCGGATGGAGCCAGAGAAATGTGGTGGGGGGGCCGGGGCC  222

Query    1  --------------------------------------------------------------ATGCCGGAGCCC  12
                                                                          ||||||||||||
Sbjct  223  AGAGTTTCAACATTGCCCCCCAGAAGGAGGAGCCAGAGATGGGGTCTGTCCAGGAAAATAGGATGCCGGAGCCC  296

Query   13  AGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCCCAGGGGAGCAGATCCTAGCATGGGCCCCAGG  86
            |||||||||||||||||||||||||||||||||||||||||||                               
Sbjct  297  AGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCC-------------------------------  339

Query   87  GGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGAACCCTGATCTGTACCAACTTTAGGGTCACCTTCCAGCCCT  160
                                                                                      
Sbjct  340  --------------------------------------------------------------------------  339

Query  161  GTGGATGGCAGTGGAATCAGGACACTCCCTTGAACAGTGAATACGATTTTGCCCTGGTCAACATTGGACGATTA  234
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  340  -----------------CAGGACACTCCCTTGAACAGTGAATACGATTTTGCCCTGGTCAACATTGGACGATTA  396

Query  235  GAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGCATAAATTTATCCCTGAGGAGAT  308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  397  GAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGCATAAATTTATCCCTGAGGAGAT  470

Query  309  TCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAGGCTGGAGGCCTAGAGCCTCAGGCTTTTC  382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  471  TCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAGGCTGGAGGCCTAGAGCCTCAGGCTTTTC  544

Query  383  AGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGCCCAACAGTATTCGGGGATAACCCTGAGC  456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  545  AGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGCCCAACAGTATTCGGGGATAACCCTGAGC  618

Query  457  AAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCATGGAGACAGCGGAAGACTGGGAGACTGA  530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  619  AAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCATGGAGACAGCGGAAGACTGGGAGACTGA  692

Query  531  GCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAACGAGAGGTTCGACGTAGCCACCAGCCTCC  604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  693  GCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAACGAGAGGTTCGACGTAGCCACCAGCCTCC  766

Query  605  CCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAGGAGAGCATTTGGCCACTTTCATCAGGGC  678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  767  CCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAGGAGAGCATTTGGCCACTTTCATCAGGGC  840

Query  679  CGTGGACCGGTCAGTGTGATGG--------TTAGGGTAATG---------GCTGTGGAT---------------  720
            |||||||||..| .|||..|||        |..|||.|.||         ||||||||.               
Sbjct  841  CGTGGACCGCGC-TTGTCCTGGCATCACCCTGGGGGCAGTGATCTTCTCCGCTGTGGAGGCTTCTATACAGCCA  913

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct  914  GTGACCCTAACAAGGAGGATATCAGAGCAGTGGAGTTGATGCTCCAGGCTGGGCATTCAGATGTTGTCCTGGTA  987

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct  988  GACACTATGGATGAGCTGCCCAGCCTTGCAGATGTCCAACTTGCCCACCTGAGGCTGAGGGCCCTCTGCCTGCC  1061

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1062  TGATTCATCTGTAGCTGAGGATAAATGGCTTTCAGCCCTGGAAGGAACACGATGGCTGGACTATGTCAGGGCTT  1135

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1136  GTCTTCGAAAGGCCAGTGACATTTCAGTATTAGTGACATCCAGGGTTCGTTCTGTAATACTTCAAGCTGCTTTC  1209

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1210  AGCCCCCGAAGCCCGAACACTGTTTGGCTTCCAATCACTAGTACAGCGAGAGTGGGTGGCAGCTGGACATCCCT  1283

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1284  TCCTGACTCGGCTTGGGGGAACTGGGGCCAGTGAAGAGGCTCCGGTGTTTCTCCTCTTCCTTGATTGTGTCTGG  1357

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1358  CAGCTCCTCCAGCAGTTTCCAGCTGATTTTGAATTCTCTGAGTTTTTCCTTCTTGCTCTTCATGACAGTGTCAG  1431

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1432  GGTTCCTGACACCCTTACCTTCCTGAGAAATACCCCCTGGGAGCGCGGAAAGCAGAGCGGACAGTTAAACTCCT  1505

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1506  ATACACAAGTCTACACCCCAGGATACTCCCAGCCTCCAGCTGGGAACTCTTTTAACCTGCAGCTGTCTGTCTGG  1579

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1580  GACTGGGATTTACGTTATAGCAATGCACAGATACTACAATTCCAGAATCCTGGCTATGACCCAGAACACTGTCC  1653

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1654  AGATTCCTGGCTCCCTAGACCACAGCCAAGCTTCATGGTTCCTGGACCCCCCAGTTCTGTGTGGCTCTTCTCTA  1727

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1728  GAGGAGCATTGACCCCCCTGAATCAGCTCTGTCCTTGGCGGGACAGTCCTTCCCTGCTGGCAGTCTCTTCTCGT  1801

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1802  TGGCTCCCTCGACCTGCTATCTCCTCTGAAAGCCTGGCTGACCAGGAATGGGGTCTCCCCTCACATTGGGGAGC  1875

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1876  TTGCCCTTTACCTCCAGGGCTGCTGCTGCCTGGGTATCTGGGACCCCAGATCAGGCTCTGGAGACGCTGCTACC  1949

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1950  TGAGGGGAAGGCCTGAGGTCCAGATGGGCCTCTCAGCTCCCACAATCTCTGGCCTCCAGGATGAGCTATCCCAT  2023

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2024  CTTCAGGAGTTATTACGGAAATGGACACCAAGAATATCTCCTGAGGATCACTCCAAGAAAAGAGATCCACATAC  2097

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2098  CATTCTCAATCCCACTGAAATTGCTGGCATTCTCAAAGGCAGGGCAGAGGGGGATCTGGGGTAGAGGAGGGTTC  2171

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2172  TGTCTAATCTTTTTTTTTTTTTTTTGTATCTGCACTTGCAGCCTCAGCTTTCACACTTCAGCCCTTAAGTTCAC  2245

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2246  TAAGAAGGTCTGAGTTTCTGCTGCAGATAGTGGTGTTAACTGCTCCAACTCTTGTCTTGCTTAGTTTCTACAAA  2319

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2320  TATTTTTGCTTCTTGTCATTTGAAGGATTAAGAAACAAAAACAATCCAGAAATTGATCGGTTTTTTTAGGCCAA  2393

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2394  TCCCATCCCTTCTGGATAACCAGATGTTAAATCATGAGATCAGAGATGCTGTTCATCAGTCCCAACAAGATGGC  2467

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2468  CTAGAAATCGCATTCTCACCTCGCCTTGCTGCTGCTTTAATTCCAAGTTCTATTTCTTCCCTTATAGTTTTCTA  2541

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2542  TGGGAATGAGGCGGATACAGGAAACACCCTATCTCCTCTGTATTTTTGTAGTGGAATTTCTATTTAAGGGGCTC  2615

Query  721  ------------------------  720
                                    
Sbjct 2616  ATTAAAGCATAGTATTTATACACA  2639

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