Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11568
Subject:
XR_002959067.1
Aligned Length:
4244
Identities:
624
Gaps:
3610

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCACCACGCCTGGCTAATTTTTGTATTTTCAGTAGAGATGGGGCTTCATCATGTTGGCCAGGTGGTCCTGAAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCTGACCTCAAGTAATCTGCCTGCCTTGGCCTTCCAAAATGCTTGGGATTACAGGCGTGAGCCACTGCGCCTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCCCTATTTTCTTTTTACAACAGACCTTGGGAAATATTTTCTTCCCCCAAGAGGTTGAGGCCCATGGAATGCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTAGGGGCAGGTGGGGTGGTGGTGCTCTGTAGCCTTTAGGACTTCTAGAATCAGGCTTCTGGGCCACCTTCTTA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCAGGTGTATACCTCTTTGTTCCAGACTGACTTTCTGTCTCACAATATCTTCACTATTTCCACAGTTGCAGCCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGACAGGAAACTGAAAGCTGAGGCCAGAAGGGTGGTGTACTGGGGGGAGGGGAAAATTGAGTGTCACTTTGGAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACTGGGGCCCCCATCTAAGGATTGCTGCCTCTGTAGATTCAAAAGCAATAAAACAGCAGCTCATTAACTCTTA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTTTGTATTTTATTTTCTGTCTTTTTCATGTCTAAATAAAGATTTTTGCTTTGCTGTCCCCAAGTCCCCCTCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTAAAGGAGCTGCAGCTCCTTCTCTCCTTGTTCCCAGCTTTCCTTACCCATCTTTGCTTCTAGGGTTGCAGATG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGAGGGACGGGGGATGGACTGCTGAGCTGAAGAGAGGTTTCCAGCCCTCACCTGTGAAAGTCCTGAACATGAAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CATTCATTTGGAGATCTGGTGTCTGGGTTGGAGGGGTGGAGTCACATACGGGAATGGGCACTTATTGCCTATTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTTGTGTATCTACGTGATGGGCAAGATTAACTGGTAAGATCTTTTTGTCCCACCCACATCCCCAAGACTTGCAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACAAACTGTACTTGTGTCTGCATCTTGGACACATTTCCATCTCTTTTTATACTTCTCCACTGCAGTCTTCACAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GATGTCTGTGTCATGCCCTCTAGAGAAAGATATGCAAAACCACTTTAACCAGTTTCCCTGCTTCCTCACCTAAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCTTGGGCCTCTGCTGACAAAAATCCCCCCAGGTCTAATTTTCATTTTCTTCTGGAAGAGGCGGCAAGGAGGCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TGAACCACTTTCACATTCCTACCCCTCTCCCCGCCCCAAACCCCTTTGAGAAGACAAAAGAACGGAGCTTTTAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGGAAGTCATCACTGAGACACTCCAGACAGGTAGCCCAGATGATTCCAGCTTCATAATCAATAGAACTGCTCCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTCAAACGGTCTCCAGTACTCATGAACAGGAAGAGAACAGGGTCTGGGATTGGGGTAAAGAAGGGAGTCGTTTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCTCTCAGTCCCCATTTCTTCCCCACCCGTCCGTCTCAGACTCCACCGTTTCCTCTCCACTTTTCCAGAATTGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GTGTATTCTCCTTTAAGGGGTTGGGCATCTCTCCCGCCCTCTCCAGAGTCGACTGAAGTTTCCGAGGAGACTTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCAGGCTGGGCTGGACACACCTTTCCAAGGACCCCCAAACTCTGCTCCGTGCACGTCAAATGCTCCTTTCCCTT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTGTCCAACCCCCTACCCCTCTCCCTAACACCCCTCTTCTCAACAAGACTCAGCCTCTCCCCGAGGTGGGTGAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CATCCTTGAGGTTTCCCACCCTTAACTGCTGTGTCCCCGGATGGAGCCAGAGAAATGTGGTGGGGGGGCCGGGG  1702

Query    1  ----------------------------------------------------------------ATGCCGGAGC  10
                                                                            ||||||||||
Sbjct 1703  CCAGAGTTTCAACATTGCCCCCCAGAAGGAGGAGCCAGAGATGGGGTCTGTCCAGGAAAATAGGATGCCGGAGC  1776

Query   11  CCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCCCAGGGGAGCAGATCCTAGCATGGGCCCCA  84
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 1777  CCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCCC----------------------------  1822

Query   85  GGGGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGAACCCTGATCTGTACCAACTTTAGGGTCACCTTCCAGCC  158
                                                                     |||||||||||||||||
Sbjct 1823  ---------------------------------------------------------AGGGTCACCTTCCAGCC  1839

Query  159  CTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAACAGTGAATACGATTTTGCCCTGGTCAACATTGGACGAT  232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840  CTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAACAGTGAATACGATTTTGCCCTGGTCAACATTGGACGAT  1913

Query  233  TAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGCATAAATTTATCCCTGAGGAG  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914  TAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGTCCCTGCATAAATTTATCCCTGAGGAG  1987

Query  307  ATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAGGCTGGAGGCCTAGAGCCTCAGGCTTT  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988  ATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAGGCTGGAGGCCTAGAGCCTCAGGCTTT  2061

Query  381  TCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGCCCAACAGTATTCGGGGATAACCCTGA  454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062  TCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGCCCAACAGTATTCGGGGATAACCCTGA  2135

Query  455  GCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCATGGAGACAGCGGAAGACTGGGAGACT  528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136  GCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCATGGAGACAGCGGAAGACTGGGAGACT  2209

Query  529  GAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAACGAGAGGTTCGACGTAGCCACCAGCCT  602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210  GAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAACGAGAGGTTCGACGTAGCCACCAGCCT  2283

Query  603  CCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAGGAGAGCATTTGGCCACTTTCATCAGG  676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2284  CCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAGGAGAGCATTTGGCCACTTTCATCAGG  2357

Query  677  GCCGTGGACCGGTCAGTGTGATGG--------TTAGGGTAATG---------GCTGTGGAT-------------  720
            |||||||||||..| .|||..|||        |..|||.|.||         ||||||||.             
Sbjct 2358  GCCGTGGACCGCGC-TTGTCCTGGCATCACCCTGGGGGCAGTGATCTTCTCCGCTGTGGAGGCTTCTATACAGC  2430

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2431  CAGTGACCCTAACAAGGAGGATATCAGAGCAGTGGAGTTGATGCTCCAGGCTGGGCATTCAGATGTTGTCCTGG  2504

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2505  TAGACACTATGGATGAGCTGCCCAGCCTTGCAGATGTCCAACTTGCCCACCTGAGGCTGAGGGCCCTCTGCCTG  2578

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2579  CCTGATTCATCTGTAGCTGAGGATAAATGGCTTTCAGCCCTGGAAGGAACACGATGGCTGGACTATGTCAGGGC  2652

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2653  TTGTCTTCGAAAGGCCAGTGACATTTCAGTATTAGTGACATCCAGGGTTCGTTCTGTAATACTTCAAGCTGCTT  2726

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2727  TCAGCCCCCGAAGCCCGAACACTGTTTGGCTTCCAATCACTAGTACAGCGAGAGTGGGTGGCAGCTGGACATCC  2800

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2801  CTTCCTGACTCGGCTTGGGGGAACTGGGGCCAGTGAAGAGGCTCCGGTGTTTCTCCTCTTCCTTGATTGTGTCT  2874

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2875  GGCAGCTCCTCCAGCAGTTTCCAGCTGATTTTGAATTCTCTGAGTTTTTCCTTCTTGCTCTTCATGACAGTGTC  2948

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2949  AGGGTTCCTGACACCCTTACCTTCCTGAGAAATACCCCCTGGGAGCGCGGAAAGCAGAGCGGACAGTTAAACTC  3022

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3023  CTATACACAAGTCTACACCCCAGGATACTCCCAGCCTCCAGCTGGGAACTCTTTTAACCTGCAGCTGTCTGTCT  3096

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3097  GGGACTGGGATTTACGTTATAGCAATGCACAGATACTACAATTCCAGAATCCTGGCTATGACCCAGAACACTGT  3170

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3171  CCAGATTCCTGGCTCCCTAGACCACAGCCAAGCTTCATGGTTCCTGGACCCCCCAGTTCTGTGTGGCTCTTCTC  3244

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3245  TAGAGGAGCATTGACCCCCCTGAATCAGCTCTGTCCTTGGCGGGACAGTCCTTCCCTGCTGGCAGTCTCTTCTC  3318

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3319  GTTGGCTCCCTCGACCTGCTATCTCCTCTGAAAGCCTGGCTGACCAGGAATGGGGTCTCCCCTCACATTGGGGA  3392

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3393  GCTTGCCCTTTACCTCCAGGGCTGCTGCTGCCTGGGTATCTGGGACCCCAGATCAGGCTCTGGAGACGCTGCTA  3466

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3467  CCTGAGGGGAAGGCCTGAGGTCCAGATGGGCCTCTCAGCTCCCACAATCTCTGGCCTCCAGGATGAGCTATCCC  3540

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3541  ATCTTCAGGAGTTATTACGGAAATGGACACCAAGAATATCTCCTGAGGATCACTCCAAGAAAAGAGATCCACAT  3614

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3615  ACCATTCTCAATCCCACTGAAATTGCTGGCATTCTCAAAGGCAGGGCAGAGGGGGATCTGGGGTAGAGGAGGGT  3688

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3689  TCTGTCTAATCTTTTTTTTTTTTTTTTGTATCTGCACTTGCAGCCTCAGCTTTCACACTTCAGCCCTTAAGTTC  3762

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3763  ACTAAGAAGGTCTGAGTTTCTGCTGCAGATAGTGGTGTTAACTGCTCCAACTCTTGTCTTGCTTAGTTTCTACA  3836

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3837  AATATTTTTGCTTCTTGTCATTTGAAGGATTAAGAAACAAAAACAATCCAGAAATTGATCGGTTTTTTTAGGCC  3910

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3911  AATCCCATCCCTTCTGGATAACCAGATGTTAAATCATGAGATCAGAGATGCTGTTCATCAGTCCCAACAAGATG  3984

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 3985  GCCTAGAAATCGCATTCTCACCTCGCCTTGCTGCTGCTTTAATTCCAAGTTCTATTTCTTCCCTTATAGTTTTC  4058

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 4059  TATGGGAATGAGGCGGATACAGGAAACACCCTATCTCCTCTGTATTTTTGTAGTGGAATTTCTATTTAAGGGGC  4132

Query  721  --------------------------  720
                                      
Sbjct 4133  TCATTAAAGCATAGTATTTATACACA  4158

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