Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
NR_003572.2
Aligned Length:
5815
Identities:
171
Gaps:
5621

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAAGGCGGGGCCGGGCCGGGGCGGGGTCTCGGGCAGGGGCGGGGAGCTTACCGACCTCCCGCCCCCGCTGCGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTTTCTGGCCCTGCCAGTGTCTCCGCCGGTTGAAAGCGCGTGTCTGCGTCGGGTTCTGTTGGAGTGCGTTCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGTGCCGTGGGTCCGCGCTGCTTCCACCCAACTTCCTGTTAGAGTTTCTCTCCTGTCACAATGGCATGGTCTCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCTCACTGCGACCTCTGCTTCCTGGGTTCAAGGATTCTCCTGCCTCAGTCTCCCAAGTAGCTGGGATTACAGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCACCCGAGGACGGGTCACCATGGCTTTGGAGCACCTGGTAGTGTGGCATGTCCACAGTGAAGACCAGAGTTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGTTGTCCTTAAGACTGACCTGGGGAGACGTGGCTGCAGGCCATTGAGGAAGACGGCACCGAAAGCGAAGGAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCCTGCTCCTCCTAAAGCCGAAGCCAAAGTGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCCACACGCAAAAAAGAAGATCCGCATGTCACTCACCTTCAGGCGGCCCAAGACACTGCGACTTCGGAGGCAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCAGATATCCTCGGAAGAGCACCCCCAGGAGAAACAAGCTTGGCCACTATGCTATCAAGTTTCCGCTGACCAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGAGTGGGCCGGAAGAAGATAGAAGAAAGCAACATGCTTGTGTTCTTCGTGGATGTTAAAGCCAACAAGCACCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GATCAGACAGGCTGTGAAGAAGGTCTATGACAGTGATGTGGCCAAGGTCACCACCCTGATTTTTCCTGATAAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGAACAAGGCATATATGTTCGACTGGCTCCTGATTATGAAGCTTTGGATGTTGCAACAAAATTGGGATCATCTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AACTGAGTCCAGCTGGCTAACTCTAAATACATGTGTATCTTTTCACCATAAAAGAATAATGTTTTTCATAAGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGACAACTTAATTAGAATCAAATCTATAAGCTTTAAGATTTTACATTTCTGTAAGTATAATATTAGCTTATTTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACTAGAACTCAAGCAGAATAGGAATTTATGTTTGTTTTATATTCAAGTGATAACTTTGAAGACATAGTTTTATT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACACCAAAAATTTTATATTAATCTCATTTAAGTAAGTTTTATCCAAATCATGTTAACTTAAAAAACATTTGATC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGTTCCTATATTTCTAGGAGTTTGGTGAATATTTATTTATAAATGGTTATTTTTTTCCAAGCCAAGTTAGAATA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GAGCACTTTTATAGGATTTTATAAATGAATTTTGCAGTGCTATCCGGAGTTAAGAAAATATCACATATACATTA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CATACAGTAATAGATATACAAACACAAATAGAGATTTCATAGCTTTCATCCTGAAATTTCAGCCATGAATCAGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CATAAATATTCTGATGGTTAATTTTAGACATCTACTTGATTGGATTAAGAAACATACATAGCTGGTCAAACAAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTCAGCCATGAAACAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGACTGGATTGAGAGACACAC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTAGCTGGTGAAACACAATTTCTGGGCATATCTGTGAAGGTGTTTCTGGAAGACACTGAGATAACCCTGACCCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GTGTGGATGGGCACTGATATGGTTTGCCTGTGTCCCCACCCAGATCTCATCTTGAATTGTAGTTCCTATAATCC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GTACATGTCGTGGGAGGGACCCAGTGGGAGGTGATTGAATCATGGTGGTTGTTACTGCCATTCTGTTTTCATGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGTGAGTGAGTTCTCATGATCCAATGGTTTCATAAGGGGCTGTTCCCCTTTGGCTCAGCACTTCTTCTTGTTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTGCCATGTGAAGAAGGACGTCTTTGTTTCCCCTTCTGCCATGATTGTGAGGCCTCTGCAGCCACGTGGAACTG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TCAGCCCATTTAACCTCTTTGTTCTTTATAAATTGCTCAGACTCAGGTATTTCTTCACAGCTGTATAAAAATGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATGAATACAGGCACCATCCAATTGGTTGAGAGCCCAGATAGAATAACAAGGAAGAGGAAAGGTGAATTATCTCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGAAATTGAAACATCCTTCTTCTCCTGCCCTTGACATCAGAATCAGTGTCTCAGAGCTTTGGCCTCAGAATCAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGTTACACCATTGGCTTCCCTGATTCTGAGTCCTTTATATCTGGAGTGAGTCATGCTGCCAGCTTTCCTGGTTC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TCCAACTTGGAGACAGGCTATTGTGTAACTTCTCAGCCTCCATAATTATGTGAACCAATTCCCCTAATGAGTCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TCTCTCATCTATCTACATATATCCTATTGATTCTGCCTTTCTGGAGAACCCTGACTAATGTTATTACAATAATA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CAAAATTCACTAGTTTATATAGAAGACTTGGTTTTTGTCTTTGCCCCATTTTGTATTTGTATTATAACTGTGTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TCTGGAAAATGGAACAAGTTTTTATCTTCTTCATATGAGGGCCAAAGCTTTTTTCTCACCAATATTTTTGGAGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTTTTAAGATTTTCTTTTGTTTGGACATACAATCTTATGGAGGCTGAGAAATAAAATTTTTTCTATTTTATTTT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCAGCCCCAGATGTTTGCTTTTGCAGATTCTTGAGCACATTGAGAGCATGGAGAGCACTCCAAGGCATGGAGTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GGGTGCCTAAAGTTTCAGTGATTACAGGGAGTTGAGAGACTCAACTGGGAAAGGAAAAGTCTAAAAGGAGGCAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTGGAAGATAAAAATTTTCTCAAAGGAGCGATTAAATTTCTAAATAATTCTTAGTAAAATCATGTAAACAGGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAGGAAATAGAATTAGTTCCATATTGGTGGAACACATAGCAGAGGTTTGAGAAGGGAGAATTTAGTCAACTGAG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAGTTCTCATGAAAGGAGCAAGTTCAAGATCACAGAGACACCTTGAAACAAAAAGCCAGGAATAACTTCCAACC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CAAGAGGAGAACAGAGAGGCCTCAAAACCAAAGCTAGGATAAGAAACTTGTAGCCCAAGAGTTATCTTCCAGAC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AAAGAAGCCTGAGATTCCAACGCAGCTTCAGAGAGTGCTCACTCAAAATGTTACTGAAACTGAAGGCTTTTTAA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TGACTTAGCCATGCCTGCAAAAGGCATTCCCTAAGGTGGCACAGAAGACGGAGCCCCCATATCCAAAGATAGCC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AAGGAGAAAGAAAGACCCCTGTTGCCAGAGCCAGTGGGCAAAGGCAACAGAAAAGGAGACAAGGGTCCTAATGG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GATGAGATCCTTTCGGATTTAGGCTTTTATACAAACTCCTGAGAACTGGCGGGTTGACAGCCATAAATGGGGTA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CCAAACTTTCTACTCATTGGATTACAAGTTCTCAGGCATCCAGAATGATGAACAAAATGACAATTTCTAGGGCT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TCTGTGGGAGAGTATGGAAAGGTCTTTTTGAACCTTTTAATGCTGTCAACGGAAGAATGATGAGGTTCATAAAT  3478

Query    1  ---------------------------------------------------ATGGAGTCTCACTC-TGTCACCC  22
                                                               |..||||.|||||| |||..|||
Sbjct 3479  TTGGAAAGGAGACATTTCTTCATTTTTATGTTTATTTTTATTTTTTTTGAGACAGAGTTTCACTCTTGTTGCCC  3552

Query   23  AGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTC  96
            |||||||||||||.||||||||||||||||||||||||||||..||||||||||||||||.|||||||..||||
Sbjct 3553  AGGCTGGAGTGCAATGGCGTGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTC  3626

Query   97  AGCCTCCCAAGTAGCTGGGATTACAGACGTGTG----CCACCATACCTGGGTAA-TTTTTGCATTTTTAGTGGA  165
            |||||||..|.||||||||||||||||    ||    ||||||.||||||.||| ||||||||.|||||||.||
Sbjct 3627  AGCCTCCTGATTAGCTGGGATTACAGA----TGCCCACCACCACACCTGGCTAATTTTTTGCAGTTTTAGTAGA  3696

Query  166  GAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-----------------------------------------  198
            ||..|.||||||.|||||||||||||.||||||                                         
Sbjct 3697  GACAGGGTTTCATCATGTTGGCCAGGCTGGTCTGAAACTCATGAGCTCAGGTGATCCACTTGCCTTAGCCTCCC  3770

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3771  AAAGTGCTGGGATTGCAGGCATGAGCCACCCAACCAGTGAGAGATTTATTTCCTATAAAGGGTTGTAGCCTGCA  3844

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3845  GGGTTGTCCTTCTGACAGGCTGGGAAGCATAGCCTCCAGCCAGAAGCCAGAAACAGACTCTTCAAGGAGGAGGT  3918

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3919  AAAGGAAATAGCAATTTATGCTGACTGGAATGGCCAAATACATTTATTTAATAAGCTCCAGGAGGAGTCATGAA  3992

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3993  TATTTATGGAAGGAGAAATGCATGCATGCACAATTGAGTTTCTGGCTTCTTCATGGGTCCCATGTACAAAAAAT  4066

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4067  GGCAGTGTTAGCATGATCCCAGGGTGGAGTTTTCAGCCCTCTGACATTAAAAGGTGAAGCAGAGGACATGAAAA  4140

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4141  CTCGCTCTGTGCATCCTCTGTACGCTGGCCAGAACCTCTCTGTTGTGGGTGGTCTCTTATCAGGCAAGAAAGGA  4214

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4215  GAGGTTGATATCGGTAGTGGAGGCTTTGAAAGGGCTGGTTTCTGTTAAATCCTTAGGGAAGAAAGCCTCATCAT  4288

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4289  GGTTAGCAAAGGAGTGGGTTTAACGATGTGTATGTTAACCCCATCATCCCATCCTAGCAAAGCTGAGAACTCAG  4362

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4363  TTTTGAAAGTTACTCTGTGGTCCCCTCAGCCAAGAGTGGTTCTGTTCAGTCAGTTGGGAGCTTATAATTTAATT  4436

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4437  TTTGTTTATCAATGCTAATGCGAAAGAGTACGCTGTCTTCATGGCAGCTGAATTTGCAAGAAACTCCTTGGATG  4510

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4511  GGGTTAATGGCAGCTGTATTTTTCTGGGAGCTCTGCTTTAATTGGACAAAGTAAGTTGTGGTAAGATTTCTTCT  4584

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4585  TTTATCTTCAGTATCTCAAATGTTTTCATTTAAATAATCTTTATAACAACTTTTGATGTCTGAGTGGATTCCCA  4658

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4659  TACAGTCATCTATTGTAAGACTTTCTGATTCCGTTTTTTTCCTTTGGTCATTATGAATAGGGCTTATGTAAATA  4732

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4733  ATTGCATGGTAGCTTTTGATTGGAAATAACATCAAAGTAGTTGTCAAAATACTTAGGAATGTTATTTTTGGATT  4806

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4807  GTAAGGTGAGACTTGTTTAGCTTTGGAAAAAAATGCCCAACTTGTAATAGGGGAGGAAAAATAATTTTCTGTTT  4880

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4881  TCGGAATTCTTAGATGGGATGCTCTGTAAAAACTGACAGATTAAAATGAGAAAAACAGAAAAGTTGAAAAACAC  4954

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4955  GTATACCTTATGGTTACATGGGAGATATTCAGGGAAAAATGAGTAAATCTCCAACAGGTGGCTTTCAATTCAAG  5028

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5029  CATAAATACTGTCTTCAACTTAAAGAAAGAAGATTTGAGGTGCAGTATTGGGGAGTTAACCAGCAAAAGCACAT  5102

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5103  TAGACAAGGGTAAGGTTCATTATACAGACTTAAGTCCATGCATTCTCCATTGATAAGACTCTTTAGTGATTTAG  5176

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5177  TTATCCTTCTCTTCTTGGTGTCGAGAGAGGTAGCTTTTAAATGGTGATTTCCTTTATAGATGTAAATTTTCCTT  5250

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5251  ACACAAGTGTAACTTCTCTGTTTTCACAACTTCCTTTGTTAGCATTTTTTTTTTTCAAAATAATTAGCTTGGAA  5324

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5325  TAATTCTTAAGCCAAAGGGACATATTTTGGGGTTGCATATTCTGGTTTCCTACCATTATATTTTGGGGTGGCAT  5398

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5399  ATTTTGGTCTTATACACTGTGTTCCACCGGCAATGAAAAGAGTTCTTGTTTTTCCTCCAGCAATTTGTCATTTG  5472

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5473  TTAAAGAGTTTAGCAGTTCTAAGAGATATAGACCAGCTGTGCTATCTTTTTGTGGTTTTCAGTTCTCTAGTATG  5546

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5547  TTGAGCATCTTTTTGTAAGTGTACTTGCCATCTGTAGATCTTCTTTGGTGAGGCGTCTGTTCAGATCTGTGTGC  5620

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5621  ATTTTTAATTGGGCTGTTTAACTTATTGTTTAGTTTTAACAATTTTTTATGTATTTTGAATACAAATTCTCAGA  5694

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5695  TCTGTATTTTGCAAATATTTTCTTCAATATGTGGCTTGTCTTTTGGTTCTCTTAACAAGGTCTCTTCCAGAGTA  5768

Query  199  -------------------------------------------  198
                                                       
Sbjct 5769  TAAACTGTAAATATTAAGAAAAAAAAAAAAAAAAAAAAAAAAA  5811

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