Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11616
- Subject:
- NR_136738.2
- Aligned Length:
- 5261
- Identities:
- 167
- Gaps:
- 5070
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCGTCCGCGGAAATTTGAAATGGCTGACGGGTCGCTGACGGGCGGCGGTCTGGAGGCAGCGGCCATGGCGCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGCGCATGGGCTGGGCGGTGGAGCAGGAGCTGGCGTCTCTGGAGAAAGGTTTGTTCCAAGATGAAGATTCATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGTGATTGTAGCTACCGTGATAAACCAGGTTCTAGTTTACAAAGTTTTATGCCAGAAGGAAAAACCTTTTTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGAAATTTTCCAAACAAATCAACTTTTGTTCTATGAGCGATTCAGAGCCTATCAAGATTACATTTTAGCTGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGCAAGGCCTCTGAGGTACAGGAATTCACAGCTGAGTTCTTGGAGAAGGTCCTTGAGCCATCTGGATGGCGGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGTCTGGCACACTAATGTGTTCAAGGTGCTGGTTGAGATCACAGATGTGGACTTTGCAGCCTTGAAGGCAGTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAGGCTTGCTGAACCATACCTCTGTGACTCTCAAGTGAGCACTTTTACCATGGAGTGCATGAAGGAGCTCCTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATCTGAAGGAGCATCGGTTGCCCCTGCAGGAGCTGTGGGTGGTGTTTGATGATTCAGGAGTGTTTGACCAGAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGCCCTTGCAATTGAGCATGTCAGATTTTTCTACCAAAACATTTGGAGGAGTTGGGATGAAGAAGAGGAGGATG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATACGATTATTTTGTCAGATGTGTTGAACCTCGATTAAGATTGCATTATGACATTCTTGAAGACCGAGTTCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCAGGACTTATTGTTGACTACCACAATCTGTTGTCTCAATGTGAGGAGAGTTACAGGAAATTTTTAAATCTGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCAGTTTGTCAAATTGTAACTCTGATTCCGAGCAGGAAAATATCTCCATGGTGGAAGGGTTAAAATTGTATT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGGAGATGGAACAGTTGAAACAAAAGCTGAAACTCATTGAGAATCCTTTGTTGAGGTATGTGTTTGGTTATCAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAGAATTCTAACATCCAAGCAAAGGGTGTCCGTTCCAGCGGTCAGAAGATCACTCATGTGGTCTCCTCCACCAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GATGGCTGGTCTCCTGCGGTCCCTGCTTACGGACAGGCTTTGCCAGGAGCCTGGTGAGGAAGAAAGAGAAATTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTTCCATAGTGATCCATTGTCTGCTATAAATGCCTGCTTCGAAGGTGACACTGTTATTGTTTGTCCTGGCCAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TATGTGGTACATGGCACTTTCTCCATTGCTGACTCCATTGAGTTGGAAGGATATGGCCTACCAGATGACATTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GATAGAAAAGAGGGGCAAAGGCGACACTTTTGTGGACTGCACTGGTGCTGATATTAAAATCTCAGGCATAAAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTGTTCAGCATGATGCTGTAGAGGGAATCTTAATTGTTCACCGTGGTAAGACTACGCTGGAAAACTGTGTGCTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAGTGTGAGACGACCGGAGTCACAGTGCGGACATCAGCAGAGTTTCTAATGAAGAACTCGGATTTATATGGCGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAAGCCCTTGAACAATACTGTGTGTCTTTCATCTGACGTCCATGGTTTCTGATGCTGTCAATCACATTTTCTCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCTATAGGGTGCTGGTATAGAAATCTACCCTGGGAGTCAGTGCACCCTGAGTGACAATGGGATCCATCACTGCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGAAGGGATCCTCATTAAGGACTTCTTAGATGAACATTATGACATTCCCAAGATATCCATGGTGAATAATATA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATACATAATAATGAAGGTTATGGTGTTGTCTTGGTGAAACCTACAATCTTCTCTGACCTGCAAGAAAATGCTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGATGGAACTGAAGAAAATAAAGCGCTTAAAATTCAGACAAGTGGAGAGCCAGATGTGGCTGAAAGAGTGGATC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TAGAAGAGCTGATTGAGTGTGCAACTGGTAAAATGGAGCTTTGTGCAAGAACTGACCCTTCTGAGCAAGTCGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGAAATTGTGAAATTGTAAATGAACTAATTGCTGCCTCCACACAGAAAGGCCAGATAAAGAAGAAAAGGTTGAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGAACTGGGGATCACGCAAGCTGATGACAACTTAATGTCACAGGAGATGTTTGTTGGGATTGTGGGGAACCAGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCAAGTGGAATGGGAAAGGTAGTTTTGGCACATTTCTTTTCTGACTACAGTGATGTAAGTAGATAGCAAAATAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGATTTTGCACATGCTGCCCTAAGAATCACTGCTGCCATTGTAGTTTGCTGTATTGTCTGTATTTTATATTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATTATTTGGGCTTGAGTGAAAGGTAGATTTATTTCCATTTGCAGGTGTTGCACATAAAACACTCCCTCTTTATA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGAAAAATCATAAATGCATATAAAATAGAAAATATTTGGAGATTGCTTATCTGAAAGTCTTGCTTTCTTATACA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CATGGTTCTCTCATATTAAGCCTGGTAGTAACTTTTTAGTGTAATTACCTTTAGCACTTCAAAGACGAGGAAGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAGGAAGGGAATGCAAGACTAGTGCATAAAAATGCAATAGGTGTCATATGTACAGCATTCTTCTTAGAGTTGCC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTTCATCCCAATTACAGTGAGTCTGATTTCCATCCTGTATTTGCATAATACTTGTCTTAAAATAAAAGCTTTT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATGATTGGGAATTTATCTGCCTAATCAGACTTATTATTGAGACGTCAATGGGACGCATTTTTCTGTTGAGCTAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCAGTCGTCAAAACAGCGATAGACAGCATAGGAGGTTTGAAGCAGAAATGAAATGTGTTATTCAGAGCCAATGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTACATAGAGCATTTTCACTATTGCTGAATGGGAATGATTAAAAACAAGGTATTTTTCGGGCCAGGCGGTGGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TCACGCTTGTAATCGCAGCACTTTGGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTCAAGACTAGCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TAGGCAACATAGTGAGACCCTGTCTCTACTAAAAATAAATTTAAAAAAAATTAGCTGAGTGTGGTGGTGCATGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATGTAGTTCCAGCTACTCAGGAGGCTGAGGCTAGAGGATCCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGGTG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGATTGCGCCACTGCATTCCAGCTTGGGCGACAGAGCGAGACCCAGTCTCAAAAAAAAAAAAAAGTATTTTTCT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTACCGTTACAGTATTCTGATTATATTACTGACACAGTCAAAATGATTAACTGTACAACCTGTATCTGCTGGG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGTTCTTGTTATCATATTGTAAAACAGCTTTAAAAATATTTATATTTTAAAAACTGTATGTGACATTAATATGC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTAATGATTAAAATTATAGTGATGAAATAACAAAATTGAATCTTGTTATATCTTTTCAAACTCACTGTGGGCCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TAGTGTCAGTGTAGCATATGTGGTCATTTAAGAATACATGGTATTTTGGTATCTGTTTTCATGCTTTAGAAAGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GTATTACATTTTTTCCCATTAAGTGTGGTTATGTTTGTTTTTTAAATTTGAGTAAAAAATAATTCTTATTTTTT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GGATGCTACTAAATGTAGGATTTATGTTAGATTTATTATTTGATCATTGAAAGGTATTTTTACTTTTAAAAAAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTTGTTGCAAGGAGGTTTAAAAAGTAATGTTCATTTCTGCATCAGTTTCAGCCAAATGTTGATATTAAAACCTT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TTATTCTTTTTTTTAATTTTTGCCTCTAGATGTGATGCCTTAAGATAAAAACCATTTATTCAACTTAAAAAAAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 ATCACTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACTATCTCGGC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTACTGTAACCTCCACCTCCTGAATTCAAGCAATTCTCCTGCCTCAGTCGCCTGAGTAGCTGGGATTATAGGTG 3848
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 3849 CCCGCCACCATGCCCAGCTAATTTTTTTTTTGTATTTATTTTATTTTTATTTTATTTTGTTTTGTTTTTGAGAT 3922
Query 3 GGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGT 76
||||..|||||.||||||||||||||||||||||||||.||||||.||||||.|||||||||.|.|||||||||
Sbjct 3923 GGAGCTTCACTTTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCATTGCAACCTCAGTCTCCTGGGT 3996
Query 77 TCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTT 150
|||||..||||||...||||||||||||||||||||||.||.||| ||||||||.|||||.|||||||
Sbjct 3997 TCAAGTGATTCTCATGCCTCAGCCTCCCAAGTAGCTGGTATGACA-------GCCACCATGCCTGGCTAATTTT 4063
Query 151 TGCATTTTTAGTGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------------------- 198
||.|||||||||.||||..|.||||.|||||||||||||||.||||||
Sbjct 4064 TGTATTTTTAGTAGAGACAGGGTTTAACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCAC 4137
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4138 CCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACGTGCCTGGCCTTTTTTTTGTATTTTTAGTA 4211
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4212 GATATGGGGTTTCACCATGTTGCCCAGGCTGTTCTCAAACTCCTGACCTCAAGTGATCCACCCACCTCAGCCTC 4285
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4286 CCAAATCACATTGATTTTTCAATTGAATTTCTACTTTATCTTGGTTTAGATTTTGTAGATAAGTTAGTAACATT 4359
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4360 TATACCTTCCTTGTTTCTTTTTATAACATGGAGTTTTTCAGATTTCATGTCTATTTTAGCTTAAATCTAAGCTT 4433
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4434 ATATTAATTTTTATTCACATGATTCATTATAATGAGTAGGCCTACTTTGTTCTTATTTAAGTTATATGCAGTAC 4507
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4508 ATTTTGCCTCAATCATGGAGAGTTAAACATCTCAAATGGTATAGCATAGGGAATTTAGGGAGTGCCCTAGAGGG 4581
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4582 GTATGGGTTTGATATTTGAGATGAAAACACTGATGTGGAGAAAGGATAGCCTTCTGTGTTGACTAATTGTGTGT 4655
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4656 CCTGTCCTTATGGTCCACTCTTAGTGTGACCTTGAATTTATGGCAGGTAGCAAAATTCTATTTTGCTGATTTGA 4729
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4730 GTATTTTATTTTAGCTTCTTTAGATGTATTTCCCTTCTTCAGTTTCTTGTTGTATTATTGCACCATAGATATTA 4803
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4804 ACACGAATATATTTTTAAAAACTGCCCAGAGATCATTTGATCTCAAGTGTATATACACTTCACTTTTCTGGAGT 4877
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4878 TACAGAAGGATGGTGAAATAATCATTTTCTGGATTTTGCTTTTCAGAGGGAGATTGAAGAAAGTTCAATAGAAC 4951
Query 199 -------------------------------------------------------------------------- 198
Sbjct 4952 ACTGATGAGCTCATAAGAACCGTGTCGTTCATGTTTCTTTGTAATTCAGTTTGCTGTTTTTATTCTTATTCCTT 5025
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5026 TCTAGGAAGTACATTCCACAGGCTTCTATGGAAATTAAGTTGAAATAAATTTTGATAATTGGCCTTTGATGCAA 5099
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5100 AATTTATGCATAGCATTTAATTTTATAACATTTTGTTTTATTCTGTGATTAAATATATATATGTATATGTTTTA 5173
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5174 AAGTCTTATATGTGGTGAACATTCTCCTCTTTTTTTAGTTCTCACTATTAATAGAAAAAAATATATATTTTAAA 5247
Query 199 ------- 198
Sbjct 5248 AACAAAA 5254
