Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_001752918.2
Aligned Length:
4374
Identities:
175
Gaps:
4176

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTAAAAATAATAAATGAATAAAATAAATATATAAATAAAAATTTGACCGACAGCTTAGTAAGGATTATATAGTT  74

Query    1  ------------------------------------------------ATGGAGTCTCACTCTGTCACCCAGGC  26
                                                            ||.||||||.|||||||..|||||.|
Sbjct   75  ATGTCTGCTACTGTTTAAAAAGGCTTTTCTTTTTTTTTTTTCTTTGACATAGAGTCTTACTCTGTTGCCCAGAC  148

Query   27  TGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCC  100
            |.||||||||||||..||||||||||||||||||||||..|||||||||||||||||||||||...||||||||
Sbjct  149  TAGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCATGCCTCAGCC  222

Query  101  TCCCAAGTAGCTGGGATTACAGACGTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGAGGGAGTT  174
            |||||||||||||||||||||||.|||||||||||.||.|||.||||||||..|||||||||.||||.||.|||
Sbjct  223  TCCCAAGTAGCTGGGATTACAGATGTGTGCCACCACACATGGCTAATTTTTTTATTTTTAGTAGAGATGGGGTT  296

Query  175  TCACCATGTTGGCCAGGTTGGTCT--------------------------------------------------  198
            |||||||||||||||||.||||||                                                  
Sbjct  297  TCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCTGACTGCCTCAGCCTCCCAAAGTGGTG  370

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  371  CTATTACAGGTGTGAGCCACCTCGCCTGACCTAAAAACACTTTTCAGCTCCAATTTTAAACTTAAAATTTTTCT  444

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  445  TATTTTAAAAACAACATATGCATGTATTATCAAATACAGGAAAATATGAAGAGACAGAAGTACTTACTGATCAT  518

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  519  AATCCTACCACCAGAGACATCACTATGAATATGTTTGTACATTTTTTTCCTGTGCATTCTAAAACATAGTTAAG  592

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  593  ATTATGCTAAATATACAGTTCTCATGCTCTTTTATGTCAGAAGTGTTTTCCCATGACATTTTAAACCCCATAGA  666

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  667  CATAATTTTCTAATGGCTACATACTATTCTATCTAACCATTTCCAGAGGTTGGATATTTATCCAGCTTCTGAGA  740

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  741  CTTCCTGTTATAAAACAACACTTTGATGAACATCTTGGTACATAAATCTTTTGCATGTGACTACTTCCTTAGGA  814

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  815  CAGATTCCTAGAAGTGAAATTCTGGGTCAAAGAGTAGTAATATTTTAAAGGCTGTTTATGCATACTGACAAGCT  888

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  889  GCTTCCTGGCAATTTGTCCAAACTTTTACTCTGACTAGCATTGTATGGGAGCTTCCCTGAGTGAATGCTGCCTT  962

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct  963  TGAAGTGGGGTCAGAGACTGAGGACCAAGGGGCACAGAGAAAGAAGAGTGTGGTCCTCGATGGGAGGACCCATC  1036

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1037  ACAAACCGTCTTGCACAGTGTAAACCCTGGAGAGGGGCTGAAGAAACCACTGCAGCCCGGGGCCGCCCATTCTA  1110

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1111  CCTGGCCCATGGTAGGCACTCAAGAAATGGTTTGCTACGTGAATAAACAAATCCACAAACATATATTTCTGAAT  1184

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1185  TCCTATCATGCGTCAAACACAAGAGATAGGGAGAGAGGAGGAAAAGAAAAGCAAGGGATCATGGGATAAAAGGG  1258

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1259  GACAGTGGCAGTGGGGTGGACAGAAGTCAGAACTAAATTTACCTCATGCTTTAATTCGGCGAGTTTTCTTAGAA  1332

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1333  TAGTCTGACCATTGCTTACGTTGAGGGTCTATAGTCCTCCCTTCCCCACAAGACAAAGTCCAACCTAATTCAGC  1406

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1407  ACCAAGATCCAAGCAGCTTGGAAGATACAGGAGGGAAAATTCTGGTGTAGATTAAGTGCCACCCCCCAGCAATG  1480

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1481  GCCAGGACACAGCAGCAATGTTACCTAAGAAAGCAACTGCGCCTCTTGCTGATCAGCTAGACATGAGGGCAGTG  1554

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1555  TCCTACCTCAGCGGTTTGCAGCGGACATGCTGTCAGGCCATTGGGATAGTTCCCATAAGCCACTCCTGGTTGTC  1628

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1629  ACCACTATTCCAAGTGGGCAGGAGCAGCCTTATTGACTGAGATGGGCGGCTATGGACACACATGGGTGTACGCA  1702

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1703  TGTGATGGAAATGGGGGCTTGGGGCCCTGAGGGTCCACAGGGGCTGCGTGGTCAGGGAGGGTGGGCATGGCATC  1776

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1777  ACAGGCACCCCAGGGGAGAAGCTGGCTTTCTTCCCATACTTTTGGCACTGTTTTCTGTTTTGTTTGCCTTCAAA  1850

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1851  GAGCAAGTGATGGCTGGACAGCAAAGAGGAGTGGAGGCCGGGAGAATGGGCAGCTAGCCCAGCGCTCTCCAATA  1924

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1925  TCTGGGAGTCGACCGCACTCCTGCACTCCCTGTCATCCCTGCTAATGGTGAGGAACTGAGCAAAAGAGCCTCCA  1998

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 1999  GAGTGACAGGTGACTTAAAGCGCACGTGGCTCTACATTTACAATTGAAGTGGGCTTTGGAGATTGCAGATTCTG  2072

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2073  AATACCTGCTGGGGTGGTACAGAGGCTGTGTTCTGGTTTTGCCATCTTGGACAGGGGGTTGGGAGTCTGGGGGG  2146

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2147  CTGCCTTCTCTCCTCTTCGTGCAGCTCTGCTGGGGCCTGTCTCACACTTGTGAGCAGAGTTATGGCTGGATTCC  2220

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2221  AGGGGAGACAGAGCTTGGTTGTGAAATGTAAGGTTGTGAAATGAAGGGCTTGTGAAATGAACAAAGAATGTATT  2294

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2295  TAAGGGTCTTTCATTTTAAATCGAACACTTACATAGCACTTACTACTTGCAAAGCTCCACTCTAAGCACTTTAC  2368

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2369  CCATCTTAATTCATTTAATTCTCTTCTCAACCCTAAAAAGCAGGTATTACCATTGCTCCAATCTTACAGATGAG  2442

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2443  GAAACTCAGGCATGGAGAGGTTGAGCGACTTGCCCAAATTCATGCAGTTAGGACCTGGCAGAGCTGCGCTTTGA  2516

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2517  ACCCAGGCTGCCTGGCTCTAGAGTGTGTGCACGAAACTTCACTGCCATATGAACAAAACTGCAGGACATATGTT  2590

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2591  CTCAAAGCAAATAAGCCTCCCAGAGAGGCTTTTCCTGATGGCTTCAAGGACCTGCCCTAGCCTGGTCTGACTTC  2664

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2665  CCAGAGGGGATCCAGTCCCAACATTGGCCCTATCTTTAGACCACATTTCCATCCCATTCTCAGTGAAAACCCTG  2738

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2739  AGTCATGACAGAAGACAACCAATGCTGGAGAGAGGAGGTTTCAGGGGATGCTGTCCTGATCCAGGCTGGTGAGG  2812

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2813  CAAGGAGGGGCTGCGGCTTCCTGAGCTCTCCGAGCTGCTAATGTGCGTGGGGAATGCTAAGCAGCCTCCAGGCT  2886

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2887  CTGACCAGGTTTGTCTTCTAGGACCCACTTGCCCAATGGGTGCCAGGACACCAGGTCTGGGTCTGGAGAAGAGA  2960

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 2961  ATTCTTCTCCAAGGGATGTTGATGGTCCATTCCGGAAATGAAAGCTTCCCACGGTCTGCCCTGCACCAGGCTTT  3034

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3035  CATCAGTGAGAAATACCCCGAATTTACACCCAAACCTAAAAGGAGAAGCGTAGAAGTGTTCTTGGCCCAATTCT  3108

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3109  TTTAATTGCAAGTCCTACTAGCAGGACAACTAAGGGATTATCCCTAAACTTTCATTTAAAAGTCTGGGGAGGGA  3182

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3183  AGGAAGGAGTAAAAACTTTGGCAGTCAGATTTTTCTCACTTTCACATTTATTCTTTACTATTAATGACTTGTTC  3256

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3257  ATCATGCTGTACAACAATTGTGCAAAGATGCATACGTTTGCCACTATAATTTGCCATTAAAATGTAATAATCAG  3330

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3331  TAAGTATACACGGCGTGCCAGGTGCTAAACAGCAGATGAGGGGCGAGGTGGGTGAAGGTTCCATGCCGTGAGTT  3404

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3405  TGTGGCTAATGGAACCCCTCATGCTGCTGCTATCCTTCCTGGGCCCAGCAGTTGGATCCTGCAGGGGTGCCCCA  3478

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3479  CTCTCTCGGGGACCTCAGAAATGTCCTCTATGGTTAGGGACGGCTAAGGAGGGTGTATCTGCAGGATTCCCAGG  3552

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3553  CACTGGGAGGTGTATAGAGGTCACAGGACCCATACAACCACCCCAGACCTTGTCAGAGTGCTCCAGTCTGGCAT  3626

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3627  CCGCAGAAGGCCAGGGAGGGTCAAGGGGCAGTGCTGAGCCACTGAACACAGCCACAGAGTTGGAGCTGCCAGGC  3700

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3701  AGAAGGTGCACGGCTCAGCAGAGGAGACCCCTTGAGGCAGCAATGCTGGGGCCGGAGGGTCAAGGCTGAGGAGA  3774

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3775  AGGCCACCGCAATGCCCTGTGTGGCCCTCATGAGCTGAGGGACCATGGGAAGGTGGCCTAGCCACTCTGAGCCT  3848

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3849  CAGTTTCCCCGGGAGATAAAAACAGAGACAGTATCTGCAAACTCAACAGGGCATTATGGTGAAGAAATGAGAGG  3922

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3923  ACTCAGGAACATGTTAGCTGTCACAGCCTTAGCCACTGCCAACTCCAGCCAGGCAGCTGGTCAACATTGCCGAG  3996

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 3997  CACCAGCCAGGTGACAGGAGGACAGAGGGCTCGGGGGAAACCAAATCCATCCCCCCAAACAAAAGAAAAACACA  4070

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4071  AACAAAAATAGGCACCAGAGCCGCCGGACGTGTACAAAGACTGTGTACGTTCTGCCTGTGGACAGAGCCCAGGA  4144

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4145  AGAGCACCCTGGCTCCTGTGCTCCACGCCTGCAGCTCATCTGGAAGGTTCCCTGTCTATGGCAGCCAGGTACCC  4218

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4219  AGGCCAGCCTGCAAAGGCCCAGTAACAGAACTTGTGTCTAAGATAGAACTTCATAGCTTTGTGCTGCCAAGCCC  4292

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4293  ACCTGGAGCCCCCTTTAAGCCTTCTTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGGATCTCATTCTGTTACTC  4366

Query  199  --------  198
                    
Sbjct 4367  AGGCTGGA  4374