Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11616
Subject:
XR_002956167.1
Aligned Length:
5240
Identities:
167
Gaps:
5049

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGTCTGCGCAGGGACTGGCGGGACTGCGCGGCGGCAACAGCAGACATGTCGGGGGTCCGGGGCCTGTCGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGCTGAGCGCTCGGCGCCTGGCGCTGGCCAAGGCGTGGCCAACAGTGTTGCAAACAGGAACCCGAGGTTTTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTCACTGTTGATGGGAACAAGAGGGCATCTGCTAAAGTTTCAGATTCCATTTCTGCTCAGTATCCAGTAGTGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATCATGAATTTGATGCAGTGGTGGTAGGCGCTGGAGGGGCAGGCTTGCGAGCTGCATTTGGCCTTTCTGAGGCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGGTTTAATACAGCATGTGTTACCAAGCTGTTTCCTACCAGGTCACACACTGTTGCAGCACAGGGAGGAATCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGCTGCTCTGGGGAACATGGAGGAGGACAACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGACTGGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGGGGGACCAGGATGCCATCCACTACATGACGGAGCAGGCCCCCGCCGCCGTGGTCGAGCTAGAAAATTATGGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGAAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGGCGGGCAGGCCCATCGGTGCTGCTGTGTGGCTGATCGGACTGGCCACTCGCTATTGCACACCTTATATGGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGTCTCTGCGATATGATACCAGCTATTTTGTGGAGTATTTTGCCTTGGATCTCCTGATGGAGAATGGGGAGTGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGTGGTGTCATCGCACTGTGCATAGAGGACGGGTCCATCCATCGCATAAGAGCAAAGAACACTGTTGTTGCCAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGGAGGCTACGGGCGCACCTACTTCAGCTGCACGTCTGCCCACACCAGCACTGGCGACGGCACGGCCATGATCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCAGGGCAGGCCTTCCTTGCCAGGACCTAGAGTTTGTTCAGTTCCACCCTACAGGCATATATGGTGCTGGTTGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAGGTTTATGGAGCGATA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CGCCCCTGTCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCGGTCCATGACTCTGGAGATCCGAGAAGGAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGCTGCACCACCTACCTCCAGAGCAGCTGGCCACGCGC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTGCCTGGCATTTCAGAGACAGCCATGATCTTCGCTGGCGTGGACGTCACGAAGGAGCCGATCCCTGTCCTCCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACCGTGCATTATAACATGGGCGGCATTCCCACCAACTACAAGGGGCAGGTCCTGAGGCACGTGAATGGCCAGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCAAACTCGCTCTTGGACCTGGTTGTCTTTGGTCGGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGATAAAGTCCCTCCAATTAAACCAAACGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATGGAAGCATAAGAACATCGGAACTGCGACTCAGCATGCAGAAGTCAATGCAAAATCATGCTGCCGTGTTCCGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GTGGGAAGCGTGTTGCAAGAAGGTTGTGGGAAAATCAGCAAGCTCTATGGAGACCTAAAGCACCTGAAGACGTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CGACCGGGGAATGGTCTGGAACACGGACCTGGTGGAGACCCTGGAGCTGCAGAACCTGATGCTGTGTGCGCTGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGACCATCTACGGAGCAGAGGCACGGAAGGAGTCACGGGGCGCGCATGCCAGGGAAGACTACAAGGTGGGCCTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTCACCACGCCCACCTGCACCTGCCTTTTCCTGCCACCTGGTGGGACTCAGCCCCACCCCTGCATTTTCTCTGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATTTTCTTTCGTTGCCCCAAAAGTAAATCCAAAAAATGCCTTTTTCCCCCCTGGTAACTTTGATCCCTGGGTTC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCGCCATCTTCTGGATCACTGTGACCTTTTCCTTGCTTTGGGTCGGCATCCACTGATGCCAGCAGTGGCATCTC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CAAGCCAATGTGCTTTGCTGTTAGAAGGCCAAGGTTAGAAGTGCAGCTAGAGTGGCAAGACCAGGAAATAAATG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCAGTTTATTAAATAACGAGTAAGCCATCATTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAGACCTGCCCTGTGGTGGAAATGCCAGTTTATTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AATAACGAGTAAGCCACTGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGTCACTGTT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TCAAACCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAATAAGCCACCGTTTCAAACCTGCCCTGTGAAGGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AATGCCAGTTTATTAAATAAGGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCCGTTTATTAAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCCGTTTATTAAATAAGGAGTAAGCCACCA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCGTTTCAAGCCTGCCCTGT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GGAGGAAATGCCAGTTTATTAAATAACGAGTAAGCCACCATTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ATTAACGAGTAAGTCACCGTTTCAAACCTGCCCTGTGGAGGAAATGCCAGTTTAGTAACGAGTAAGTCACCGTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TTAAGCCTGTCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGCCACCGTTTCAAACCTGCCCTGTGGAGGA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGTGCCAGTTTATTAAATAATGAGTAAGTCACCGTTTCAAGCCTGCCCTGTGGAGGAAATGCCAGTTTATTAAA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TAACGAGTAAGTCACCGTTTCATACCTGCCCTGTGGAGGAAATGCCAGTTTATTAACGAGTAAGCCACCGTTTC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AGACCTGCCCTGTGGAGGAAAATGCCAGTTTATTAACAAGTAAGTCACTGTTTCAGACCTGCCCTGTGGATGAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ATGCCAGTTTATTAATGAGTAAGTCACCATTTCAGACCTGCGCTGTGGAGGAAATGCCAGTTTATTAAATAAGG  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AGTAAGCCACCATTTCAGACCTGTCCTGTGGTTTGGAAAAGGTATTATAGAGCCTGCCCTGTGGTCACTTGTTC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TTCAGATGAACTGATTTTTGTGCAGAGCGCACGTGTTGGATTCTGCCTGGTAAGAGTTTTTCCCATATGATAGC  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  AAAAAACGACGGAAAGGGAAGCTTGGGATGCAAATGCAAGTTCAGGATAAACCACATCAGCAAAAGGACAAAGG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  CTCCACAAGGCAGGCGCACAGGCTGGTTCAGGACCGTGTGTAGGCGGCTGGTGGCAGCCTTTCCAGTCAGCTGA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  ACATGGTGAATGGGAAAATCATTTTTATTCACCATGAAATTTTACTGATTTACCCTCCACTAGAATATGCTGAT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  GGCTGTGATCACTGCTCAGAACTTGCTCTTGTCTCCTTGTATGTATTAAGAGTTTCCTGCAAAGTATATGAATC  3774

Query    1  ------------------------------------------------------------ATGGAGTCTCACTC  14
                                                                        |.|||.|||||  |
Sbjct 3775  CGTGTTTGCCAGAATACAGAATAATAGTAAATTTATTATTTTTATTTTTATTTTTTTGAGAAGGAATCTCA--C  3846

Query   15  TGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCT  88
            ||||.||||||||||||||||||||||||||||..||||||||||||||||||||||.|||||||||..|||||
Sbjct 3847  TGTCCCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCT  3920

Query   89  CCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGAC-GTGTGCCACCATACCTGGGTAATTTTTGCATTTTTAG  161
            ||..|||||||||||||||.|||||||||||||||| ...|||||||||.|||     |.|||||.|||||.||
Sbjct 3921  CCTGCCTCAGCCTCCCAAGCAGCTGGGATTACAGACACACTGCCACCATGCCT-----AATTTTGTATTTTCAG  3989

Query  162  TGGAGAGGGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------------------------------  198
            |.||||.||.||||||||||.||||||.||.||||||                                     
Sbjct 3990  TAGAGATGGGGTTTCACCATATTGGCCGGGCTGGTCTCGAACTCCTGACCTCAAGTGAACCACCCACCTCGGCC  4063

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4064  TCCCAAAGTGCTAGGGTTACAGGCATGAGCCACTGTGCCTGGCCAGTGCATAAATTTAGTTGGTCACAGTCAGT  4137

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4138  TTTAATTAGAATAGAAGCCAGGTGCAGTGCCTCACACCTGTAATCCCAGCATTTGGGAGGCTGAGGCAGGCCAA  4211

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4212  TGACTTGAGCCCCAGAGTTGTAGACCAGCCTGGGCAACATGGCGAAACGTGTCTCTACAAAAACATAAAAAATG  4285

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4286  AGCCAGGTGTGGTGGTAGCACAGGAGGCTGAGGCAGGAGGATTGATTGAGCCTGGGAAGTCAAGGCTCCGGCAA  4359

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4360  GCTGTGATCACACCACTGCACTCCAGCCCAGGTGACATAGCCAGACCCTGTCTCAAAAAAAAAATTTTTTTTTA  4433

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4434  ATAAAAACAGGCTGAAAGAAAAGATTGAGGTAGTCTCCCAGCACATGGAGCAAAAAGACAAAGTATTTGATAAA  4507

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4508  CTCTTAGGTACATAAAGGATGCTTAAGGGAACATGCGGACATGGATTACTGTGGACTCACTGCTGGCTGCACAC  4581

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4582  CCCCTGGCCAGCCATGCGGCCTCCGTGGGTTCTGAACATGTTGATGGTGCCAACCTCCTGGGCTGAAGTGGAAA  4655

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4656  TGGAATGAGTTCTAGGGCATCTGTCTCTTAGATCATGTTAATGTCTGCTGTGTTTTTTCTGTATTGCTCTGTTA  4729

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4730  GAGTAATAAGAAACGTGATGGTGTTTCTGGCCTCAGGTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCA  4803

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4804  GGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGA  4877

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4878  AGGTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCC  4951

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 4952  ATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGC  5025

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5026  ATGTGTCCATGTCATAACTGTCTTCATACGCTTCTGCACTCTGGGGAAGAAGGAGTACATTGAAGGGAGATTGG  5099

Query  199  --------------------------------------------------------------------------  198
                                                                                      
Sbjct 5100  CACCTAGTGGCTGGGAGCTTGCCAGGAACCCAGTGGCCAGGGAGCGTGGCACTTACCTTTGTCCCTTGCTTCAT  5173

Query  199  ------------------------------------------------------------  198
                                                                        
Sbjct 5174  TCTTGTGAGATGATAAAACTGGGCACAGCTCTTAAATAAAATATAAATGAACAAACTTTC  5233

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