Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12042
Subject:
NM_001284241.2
Aligned Length:
1701
Identities:
1614
Gaps:
87

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAAGAAAAAACACAAATCAAGACATTTTTGGGTTCCAAGTTGCCAAAGTATGGAACAAAATCTGTAAGAAG  74

Query    1  -------------ATGCCAAATGGGACACCTGTTAATTTATTAGGAACTTCCAAGAATAGTAATGTCAAAAGTT  61
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TACATTGCAGCCAATGCCAAATGGGACACCTGTTAATTTATTAGGAACTTCCAAGAATAGTAATGTCAAAAGTT  148

Query   62  ACATCAAAAATAATGGCTCTGATTGTCCATCATCTCATTCATTTAATTGGAGGAAAGCAAATAAATATCAGCTT  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACATCAAAAATAATGGCTCTGATTGTCCATCATCTCATTCATTTAATTGGAGGAAAGCAAATAAATATCAGCTT  222

Query  136  TGTGCACAAGGTGTCGAAGAGCCTAACAATACTCAAAATTCACATGATAAAATAATTGATCCTGAAAAACGTGT  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTGCACAAGGTGTCGAAGAGCCTAACAATACTCAAAATTCACATGATAAAATAATTGATCCTGAAAAACGTGT  296

Query  210  TCCTACTCAAGGAATGTTTGATAAAAATGGGATAAAGGGAGGTTTGAAAAGTGTTTCTTTATTCACATCAAAGT  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCCTACTCAAGGAATGTTTGATAAAAATGGGATAAAGGGAGGTTTGAAAAGTGTTTCTTTATTCACATCAAAGT  370

Query  284  TAGCAAAGCCATCCACTATGTTTGTGTCATCTACAGAGGAGTTAAACCAAAAGTCTTTTTCTGGACCATCTAAT  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TAGCAAAGCCATCCACTATGTTTGTGTCATCTACAGAGGAGTTAAACCAAAAGTCTTTTTCTGGACCATCTAAT  444

Query  358  TTGGGTAAATTCACCAAAGGCACATTATTAGGAAGGACTTCATATTCTTCGATCAATACTCCAAAATCACAGTT  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTGGGTAAATTCACCAAAGGCACATTATTAGGAAGGACTTCATATTCTTCGATCAATACTCCAAAATCACAGTT  518

Query  432  GAATGGATTTTATGGAAACCGATCAGCTGGTAGCATGCAAAGGCCTAGAGCGAACTCCTGTGCCACCAGAAGCA  505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAATGGATTTTATGGAAACCGATCAGCTGGTAGCATGCAAAGGCCTAGAGCGAACTCCTGTGCCACCAGAAGCA  592

Query  506  GTTCTGGAGAAAGCTTAGCTCAATCCCCAGACAGTAGTAAATCTATTAATTGTGAAAAAATGGTAAGGTCACAA  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTTCTGGAGAAAGCTTAGCTCAATCCCCAGACAGTAGTAAATCTATTAATTGTGAAAAAATGGTAAGGTCACAA  666

Query  580  AGTTTTTCACATTCCATTCAGAATTCATTCCTTCCACCTTCATCTATAACCAGATCACATTCCTTTAATAGAGC  653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGTTTTTCACATTCCATTCAGAATTCATTCCTTCCACCTTCATCTATAACCAGATCACATTCCTTTAATAGAGC  740

Query  654  TGTGGATCTTACAAAGCCTTATCAGAACCAACAGCTATCCATTAGAGTGCCTCTACGGTCAAGTATGCTAACAA  727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TGTGGATCTTACAAAGCCTTATCAGAACCAACAGCTATCCATTAGAGTGCCTCTACGGTCAAGTATGCTAACAA  814

Query  728  GAAATTCCCGGCAGCCAGAAGTACTCAATGGGAATGAACATTTGGGGTATGGATTTAATAGGCCTTATGCTGCT  801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAAATTCCCGGCAGCCAGAAGTACTCAATGGGAATGAACATTTGGGGTATGGATTTAATAGGCCTTATGCTGCT  888

Query  802  GGTGGAAAGAAGTTGGCTTTACCAAATGGCCCAGGTGTAACTTCTACTTTAGGTTATAGAATGGTTCATCCCTC  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGTGGAAAGAAGTTGGCTTTACCAAATGGCCCAGGTGTAACTTCTACTTTAGGTTATAGAATGGTTCATCCCTC  962

Query  876  TCTACTGAAATCTAGCCGATCTCCATTTTCTGGGACTATGACAGTTGATGGAAATAAAAATTCACCTGCTGACA  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCTACTGAAATCTAGCCGATCTCCATTTTCTGGGACTATGACAGTTGATGGAAATAAAAATTCACCTGCTGACA  1036

Query  950  CATGTGTAGAGGAAGATGCTACAGTTTTGGCTAAGGACAGAGCTGCTAATAAGGACCAAGAACTGATTGAAAAT  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CATGTGTAGAGGAAGATGCTACAGTTTTGGCTAAGGACAGAGCTGCTAATAAGGACCAAGAACTGATTGAAAAT  1110

Query 1024  GAAAGTTATAGAACAAAAAACAACCAGACCATGAAACATGATGCTAAAATGAGATACCTGAGTGATGATGTGGA  1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GAAAGTTATAGAACAAAAAACAACCAGACCATGAAACATGATGCTAAAATGAGATACCTGAGTGATGATGTGGA  1184

Query 1098  TGACATTTCCTTGTCGTCTTTGTCATCTTCTGATAAGAATGATTTAAGTGAAGACTTTAGTGATGATTTTATAG  1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGACATTTCCTTGTCGTCTTTGTCATCTTCTGATAAGAATGATTTAAGTGAAGACTTTAGTGATGATTTTATAG  1258

Query 1172  ATATAGAAGACTCCAACAGAACTAGAATAACTCCAGAGGAAATGTCTCTCAAAGAAGAGAAACATGAAAATGGG  1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ATATAGAAGACTCCAACAGAACTAGAATAACTCCAGAGGAAATGTCTCTCAAAGAAGAGAAACATGAAAATGGG  1332

Query 1246  CCACCACAGGATATGTTTGATTCCCCCAAGGAAAATGAAAAAGCCTTCAGTAAAACTGATGAATGGATAGATAT  1319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCACCACAGGATATGTTTGATTCCCCCAAGGAAAATGAAAAAGCCTTCAGTAAAACTGATGAATGGATAGATAT  1406

Query 1320  AAGTGTCTCTGACAGGAGTGAATGTACAAAACATACTTCTGGGAATAATTTGGTTTCACCAGATACAGACTACA  1393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AAGTGTCTCTGACAGGAGTGAATGTACAAAACATACTTCTGGGAATAATTTGGTTTCACCAGATACAGACTACA  1480

Query 1394  GAGCTGGTTCTTCGTTTGAACTCTCTCCATCTGATAGCTCTGATGGAACATACATGTGGGATGAAGAAGGCTTG  1467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GAGCTGGTTCTTCGTTTGAACTCTCTCCATCTGATAGCTCTGATGGAACATACATGTGGGATGAAGAAGGCTTG  1554

Query 1468  GAACCCATTGGAAATGTCCATCCAGTTGGGAGCTATGAGTCCTCTGAAATGAACAGCATAGTATGTATGGATTT  1541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GAACCCATTGGAAATGTCCATCCAGTTGGGAGCTATGAGTCCTCTGAAATGAACAGCATAGTATGTATGGATTT  1628

Query 1542  ATATACTCTTGGAATATTTTGTTTACCCTACTATAGAGAGACTTGTGATATGATTGATTTTGTAAAAAATTTA  1614
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  ATATACTCTTGGAATATTTTGTTTACCCTACTATAGAGAGACTTGTGATATGATTGATTTTGTAAAAAATTTA  1701

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.