Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12042
Subject:
XR_001747112.1
Aligned Length:
3198
Identities:
1580
Gaps:
1604

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCGGCCCTGGAGGGCGGAGTCCGGGCGGGCGCCGGCCGAGGGAGGGGGCGCGGCGGCTTTGGAGTCCGGCGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCTCAGGCCGCGGACGCGATGCTGGTTGCTGCGGCTCGGGCGGCGGGGCTGGCGGGGATGTGACGGGCGGCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGACCTCCGCACGATTCTTTCAACTTTTAAGAACAAATGCACCTTATAGCTCATGGAAGAAAAAACACAAATC  296

Query    1  ------------------------------------------------------------------ATGCCAAA  8
                                                                              ||||||||
Sbjct  297  AAGACATTTTTGGGTTCCAAGTTGCCAAAGTATGGAACAAAATCTGTAAGAAGTACATTGCAGCCAATGCCAAA  370

Query    9  TGGGACACCTGTTAATTTATTAGGAACTTCCAAGAATAGTAATGTCAAAAGTTACATCAAAAATAATGGCTCTG  82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGGGACACCTGTTAATTTATTAGGAACTTCCAAGAATAGTAATGTCAAAAGTTACATCAAAAATAATGGCTCTG  444

Query   83  ATTGTCCATCATCTCATTCATTTAATTGGAGGAAAGCAAATAAATATCAGCTTTGTGCACAAGGTGTCGAAGAG  156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATTGTCCATCATCTCATTCATTTAATTGGAGGAAAGCAAATAAATATCAGCTTTGTGCACAAGGTGTCGAAGAG  518

Query  157  CCTAACAATACTCAAAATTCACATGATAAAATAATTGATCCTGAAAAACGTGTTCCTACTCAAGGAATGTTTGA  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCTAACAATACTCAAAATTCACATGATAAAATAATTGATCCTGAAAAACGTGTTCCTACTCAAGGAATGTTTGA  592

Query  231  TAAAAATGGGATAAAGGGAGGTTTGAAAAGTGTTTCTTTATTCACATCAAAGTTAGCAAAGCCATCCACTATGT  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TAAAAATGGGATAAAGGGAGGTTTGAAAAGTGTTTCTTTATTCACATCAAAGTTAGCAAAGCCATCCACTATGT  666

Query  305  TTGTGTCATCTACAGAGGAGTTAAACCAAAAGTCTTTTTCTGGACCATCTAATTTGGGTAAATTCACCAAAGGC  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTGTGTCATCTACAGAGGAGTTAAACCAAAAGTCTTTTTCTGGACCATCTAATTTGGGTAAATTCACCAAAGGC  740

Query  379  ACATTATTAGGAAGGACTTCATATTCTTCGATCAATACTCCAAAATCACAGTTGAATGGATTTTATGGAAACCG  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACATTATTAGGAAGGACTTCATATTCTTCGATCAATACTCCAAAATCACAGTTGAATGGATTTTATGGAAACCG  814

Query  453  ATCAGCTGGTAGCATGCAAAGGCCTAGAGCGAACTCCTGTGCCACCAGAAGCAGTTCTGGAGAAAGCTTAGCTC  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATCAGCTGGTAGCATGCAAAGGCCTAGAGCGAACTCCTGTGCCACCAGAAGCAGTTCTGGAGAAAGCTTAGCTC  888

Query  527  AATCCCCAGACAGTAGTAAATCTATTAATTGTGAAAAAATGGTAAGGTCACAAAGTTTTTCACATTCCATTCAG  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AATCCCCAGACAGTAGTAAATCTATTAATTGTGAAAAAATGGTAAGGTCACAAAGTTTTTCACATTCCATTCAG  962

Query  601  AATTCATTCCTTCCACCTTCATCTATAACCAGATCACATTCCTTTAATAGAGCTGTGGATCTTACAAAGCCTTA  674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AATTCATTCCTTCCACCTTCATCTATAACCAGATCACATTCCTTTAATAGAGCTGTGGATCTTACAAAGCCTTA  1036

Query  675  TCAGAACCAACAGCTATCCATTAGAGTGCCTCTACGGTCAAGTATGCTAACAAGAAATTCCCGGCAGCCAGAAG  748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCAGAACCAACAGCTATCCATTAGAGTGCCTCTACGGTCAAGTATGCTAACAAGAAATTCCCGGCAGCCAGAAG  1110

Query  749  TACTCAATGGGAATGAACATTTGGGGTATGGATTTAATAGGCCTTATGCTGCTGGTGGAAAGAAGTTGGCTTTA  822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TACTCAATGGGAATGAACATTTGGGGTATGGATTTAATAGGCCTTATGCTGCTGGTGGAAAGAAGTTGGCTTTA  1184

Query  823  CCAAATGGCCCAGGTGTAACTTCTACTTTAGGTTATAGAATGGTTCATCCCTCTCTACTGAAATCTAGCCGATC  896
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCAAATGGCCCAGGTGTAACTTCTACTTTAGGTTATAGAATGGTTCATCCCTCTCTACTGAAATCTAGCCGATC  1258

Query  897  TCCATTTTCTGGGACTATGACAGTTGATGGAAATAAAAATTCACCTGCTGACACATGTGTAGAGGAAGATGCTA  970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCCATTTTCTGGGACTATGACAGTTGATGGAAATAAAAATTCACCTGCTGACACATGTGTAGAGGAAGATGCTA  1332

Query  971  CAGTTTTGGCTAAGGACAGAGCTGCTAATAAGGACCAAGAACTGATTGAAAATGAAAGTTATAGAACAAAAAAC  1044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CAGTTTTGGCTAAGGACAGAGCTGCTAATAAGGACCAAGAACTGATTGAAAATGAAAGTTATAGAACAAAAAAC  1406

Query 1045  AACCAGACCATGAAACATGATGCTAAAATGAGATACCTGAGTGATGATGTGGATGACATTTCCTTGTCGTCTTT  1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AACCAGACCATGAAACATGATGCTAAAATGAGATACCTGAGTGATGATGTGGATGACATTTCCTTGTCGTCTTT  1480

Query 1119  GTCATCTTCTGATAAGAATGATTTAAGTGAAGACTTTAGTGATGATTTTATAGATATAGAAGACTCCAACAGAA  1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GTCATCTTCTGATAAGAATGATTTAAGTGAAGACTTTAGTGATGATTTTATAGATATAGAAGACTCCAACAGAA  1554

Query 1193  CTAGAATAACTCCAGAGGAAATGTCTCTCAAAGAAGAGAAACATGAAAATGGGCCACCACAGGATATGTTTGAT  1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CTAGAATAACTCCAGAGGAAATGTCTCTCAAAGAAGAGAAACATGAAAATGGGCCACCACAGGATATGTTTGAT  1628

Query 1267  TCCCCCAAGGAAAATGAAAAAGCCTTCAGTAAAACTGATGAATGGATAGATATAAGTGTCTCTGACAGGAGTGA  1340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TCCCCCAAGGAAAATGAAAAAGCCTTCAGTAAAACTGATGAATGGATAGATATAAGTGTCTCTGACAGGAGTGA  1702

Query 1341  ATGTACAAAACATACTTCTGGGAATAATTTGGTTTCACCAGATACAGACTACAGAGCTGGTTCTTCGTTTGAAC  1414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ATGTACAAAACATACTTCTGGGAATAATTTGGTTTCACCAGATACAGACTACAGAGCTGGTTCTTCGTTTGAAC  1776

Query 1415  TCTCTCCATCTGATAGCTCTGATGGAACATACATGTGGGATGAAGAAGGCTTGGAACCCATTGGAAATGTCCAT  1488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TCTCTCCATCTGATAGCTCTGATGGAACATACATGTGGGATGAAGAAGGCTTGGAACCCATTGGAAATGTCCAT  1850

Query 1489  CCAGTTGGGAGCTATGAGTCCTCTGAAATGAACAGCATAG-TATGTATGGATTTATATACTCTTGGAATATTTT  1561
            |||||||||||||||||||||||||||||||||||||||| |||       |||..|||.|||| ||||..|.|
Sbjct 1851  CCAGTTGGGAGCTATGAGTCCTCTGAAATGAACAGCATAGATAT-------TTTGAATAATCTT-GAATCATGT  1916

Query 1562  GTTTACCCTACTATAGAGAGACTTG-TGA---TATGATTGATTT---------------------TGTAAAAAA  1610
            |   |||      |.||| ||  || |||   ||||.|||||.|                     |.|..||||
Sbjct 1917  G---ACC------TTGAG-GA--TGATGATCTTATGCTTGATGTGGATCTGCCTGAGGATGCACCTCTTGAAAA  1978

Query 1611  TTTA----------------------------------------------------------------------  1614
            |.|.                                                                      
Sbjct 1979  TGTGGAGTGTGACAATATGAACCGCTTTGACCGACCAGACAGAAATGTTCGGCAGCCTCAGGAAGGTTTTTGGA  2052

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2053  AAAGGCCACCCCAGAGGTGGAGTGGACAGGAGCATTACCACCTCAGCCACCCTGACCACTATCATCACCATGGA  2126

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2127  AAAAGTGACTTGAGCAGCATGATGGAAGTGGTTCATTGCATGATATTCAACTGTCATTGCCATCCAGTCCAGAA  2200

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2201  CCAGAAGATGGTGATAAAGTATATAAGAATGAAGATTTATTAAATGAAATAAAACAACTTAAAGACGAAATAAA  2274

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2275  GAAAAAAGATGAAAAGATCCAACTATTAGAACTTCAGCTTGCAACTCAGCATATCTGCCACCAAAAATGTAAAG  2348

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2349  AGGAAAAATGCACTTATGCTGATAAATATACCCAAACACCCTGGAGACGAATTCCTGGTGGGTATTCTGCTCCC  2422

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2423  TCCTTCTCTCCTTGGCAGGGCTCCTTCCAGGGGATCCCACGGACTGTTCCACCGCACCGCAGACAGACCTCAAG  2496

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2497  TACTACAGCCTTCCAGCAGCCTTCCCAGACCCACAGATCACACCCAGGGAAAACTAATAAAGCCACAACGTATC  2570

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2571  GAGGCCCGCAGTGAATGCTCAATCCAAGACATGCATCAGGGCGGTGCACATCCGGAAGAAAGCTTTACACACGT  2644

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2645  CTTGCACCAAGAAAGCAACTATGGTTTGGAAGAGCAGCCTTTTTCATCAGGCCCACAATTAACAATGGATGTGG  2718

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2719  CTAAGAGTACACCTTCTGAAGCAAACTTAAACATTACTGTAAATGCTCAAGAGCCTTATCATTTGGCAAACAAT  2792

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2793  CAAATTAGTGACATGCAGTTTATACCCACTTCTCTTCAGACACCTCCCGAGTCAAGTACAGTAGACCAGGCTAA  2866

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2867  GAGAGTTGGAAGAAATCAGTCTCCGCCAGTGGGTTATATGTCTCAGCCCAAGTCCTTGCAGCTTTTAAAGCCAT  2940

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 2941  CCATATTGAGTTCTTTGGTACCGCCTCCAGTTTCTGAATCATCTCCAAGTAGGACTCCCACTTGTAAAAAGTCA  3014

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 3015  CCAATAATCACAACATGTAATTCAGCAAAACTTCAGCCAACATCTAGTCAAACAAATCTTGCAAATAATCAGAA  3088

Query 1615  --------------------------------------------------------------------------  1614
                                                                                      
Sbjct 3089  TCTGAAAGCATCTAAGCTCCGCCCCCCCTCAGGCTCTTTCAAACAAAAACAAACAAACAGCCCCCAACTAGAGC  3162

Query 1615  ----------------  1614
                            
Sbjct 3163  CTCAAAGCTTCCAGGC  3178

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