Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12101
Subject:
NR_144327.1
Aligned Length:
4172
Identities:
1812
Gaps:
2360

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGACGCCACTGTCGCTGCGACGATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGCTGCAGCAGGGCGAGGCTCCAGGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCGGGACTTTCGCTACCTGTTGCGTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCTCCCGTTCGTTCCTCTGCCAGAGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGAGCCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTTCTAACTGGACCACGCTGCCACCACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAGATGCCTTGAGAGAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GATTTTGTGTTTGGGTCAAAGGGTGTGAAATTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAGTTTTGTGGCTGAAGCAAAGCCACCTACAGTTACTATGCCTCGAATCAAGGCATTGATGACGGGGAGCCTTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTGGCTTTGTCGACGTCATCAGGAACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGATAAGACAAGCAAAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAGCTGGAAAAAGAATAGTCTTTTATGGAGATGAAACCTGGGTTAAATTATTCCCAAAGCATTTTGTGGAATA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGATGGAACAACCTCATTTTTCGTGTCAGATTACACAGAGGTGGATAATAATGTCACGAGGCATTTGGATAAAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TATTAAAAAGAGGAGATTGGGACATATTAATCCTCCACTACCTGGGGCTGGACCACATTGGCCACATTTCAGGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCCAACAGCCCCCTGATTGGGCAGAAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATCCACACCTCACTGCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTCGAAGGAGAGAGAGACGCCTTTACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCATGTCTGAAACAGGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTCACGGGGCCTCCTCCACCGAGGAGGTGAATACACCTCTGATTTTAATCAGTTCTGCGTTTGAAAGGAAACCC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGTGATATCCGACATCCAAAGCACGTCCAACAGACGGATGTGGCTGCGACACTGGCGATAGCACTTGGCTTACC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GATTCCAAAAGACAGTGTAGGGAGCCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAGAGAGCAGTTGAGAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTTTACATTTGAATACAGTGCAGCTTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATGAAAAAGATCCTGGG  1258

Query    1  ---------------ATGTCAGAAAGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGA  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TTTGAGCAGTTTAAAATGTCAGAAAGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGA  1332

Query   60  AGTCCTATTCAACCTGGGCTCCAAGGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGA  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGTCCTATTCAACCTGGGCTCCAAGGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGA  1406

Query  134  GTGCACAAGTGGCCCAGTACGACATCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTG  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GTGCACAAGTGGCCCAGTACGACATCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTG  1480

Query  208  CTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTC  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTC  1554

Query  282  TCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGT  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGT  1628

Query  356  GCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATT  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATT  1702

Query  430  GTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTG  503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTG  1776

Query  504  GTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGG  577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGG  1850

Query  578  AGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAAC  651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAAC  1924

Query  652  TACTTTCTGGGAGATGACGGTGAGCCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACAGCAGC  725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TACTTTCTGGGAGATGACGGTGAGCCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACAGCAGC  1998

Query  726  GTGGCAGGACGGGCCTGGCTGTGATGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGC  799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GTGGCAGGACGGGCCTGGCTGTGATGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGC  2072

Query  800  TCAGAGGCCGCGAGAAGTGGATGGTGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGCGCTCC  873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TCAGAGGCCGCGAGAAGTGGATGGTGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGCGCTCC  2146

Query  874  CTAAACCAGACAGGTGTGCAGTGGGCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGCTCTGACCACAAAGC  947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  CTAAACCAGACAGGTGTGCAGTGGGCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGCTCTGACCACAAAGC  2220

Query  948  CGAGCTCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGT  1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CGAGCTCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGT  2294

Query 1022  CCAAGGCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCG  1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CCAAGGCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCG  2368

Query 1096  TGGCGGCCGGACAGCAAGGACATTTCC-----------------------------------------------  1122
            |||||||||||||||||||||||||||                                               
Sbjct 2369  TGGCGGCCGGACAGCAAGGACATTTCCAAGTAAGTGCGTGGCGGACACGGGGTGCATAGAGCCACTTTACTGTT  2442

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2443  TGAAGAACTGGCGGACACGGGGCGCGTGGAACCACTTCACTGTTTGATGAACTGAGAAGACCAAGCCAGTCTTC  2516

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2517  AGAGCATTGGAGTTTGGTGTTTGTGAATTGTGATTGTGTCAACAGCTACTGGAGTGTAACTAAGAAAACCTCAA  2590

Query 1123  --------------------------------------------------------------AAGGGTATTATT  1134
                                                                          ||||||||||||
Sbjct 2591  CCAGCTGCGTTGTTAGCACTTTTTATGTTTTATGTGTTACTTTTAGGAGACAAATCACTTGGAAGGGTATTATT  2664

Query 1135  GAAGCTCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTACTTAAATCTCAAGT  1208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  GAAGCTCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTACTTAAATCTCAAGT  2738

Query 1209  CATTGCTGCAGACTTCAAACTCAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAGTTCTTCTGGCAGCCT  1282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  CATTGCTGCAGACTTCAAACTCAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAGTTCTTCTGGCAGCCT  2812

Query 1283  TGCTCTTTAGACCACATAATCTTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTAATGACTAAATTCATC  1356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  TGCTCTTTAGACCACATAATCTTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTAATGACTAAATTCATC  2886

Query 1357  TGGAAGCCCCTGAGACACGATGCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCAAGCATTCTTCTATTT  1430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  TGGAAGCCCCTGAGACACGATGCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCAAGCATTCTTCTATTT  2960

Query 1431  TCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAA  1504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  TCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAA  3034

Query 1505  TCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTC  1578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  TCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTC  3108

Query 1579  CTGAGCTCAGAAACACGCAGTGGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCC  1652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  CTGAGCTCAGAAACACGCAGTGGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCC  3182

Query 1653  AGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCTCCAAAAC  1726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  AGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCTCCAAAAC  3256

Query 1727  TTCTCTACGAGGGAATGCACCTGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCAAACCAGA  1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  TTCTCTACGAGGGAATGCACCTGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCAAACCAGA  3330

Query 1801  CTCACACAGTCT--------------------------------------------------------------  1812
            ||||||||||||                                                              
Sbjct 3331  CTCACACAGTCTTAGACTAAGCTGAACACTGGAAAAATAATACATGCTTAAAGTCTGCTGTTATTCTAAAATGA  3404

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3405  AAGATATGAATTCAACAAAGTTGATGGATAACTTTCTTTGACTGCTCTACCTGAATTTAGACTAAGCAGTAAAT  3478

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3479  AGTTTAATAAAAGATCACTTTAATATACAGTTTGTATCATATTTTCCCCCATTGACAATCACTCTAGAAGCTTC  3552

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3553  TGAACTTTTAATTTCCTCTGAATAAGCTATGGTGTGACCCAAATATGTGTGTTTAAATCAATGAATGAAAAGGT  3626

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3627  TCTGGACTTTGTTAGAGTCCAGGAGCTCTGTGGGAGGAGGCACCCAGATTACCTTAGGGAGCACAGAGCTCTTA  3700

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3701  GAATCCTACAAACCACTGAGGGCCCCAAGGCGCTTTGGTTTATGAGGGTTACATGTATCAGTGTTTATGGCATT  3774

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3775  TGAGATGAAAACTAAGATAAAAAAGTATTCATTTATAAGGAATCTATTGCATATTAATGAAACACTTGAAGGAA  3848

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3849  AAGTAACTATATTTTCCAAAACAAAAAAATTCAGTGAGACCCAGCACTTTGGGAGGCCAGAGTGGGGGTATCAC  3922

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3923  TTGAGCCCAGGTGTTTGAGATCAGCCTGGGAAACATAGTGAGACCCTCATCTCTCCAAAAACTTCAAAAAATTA  3996

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3997  GCTGGGCGTGATGGCACACACCTGTGGTCCCAGCTACTCAGGTGGCTGAGGAAAGAGTATTGTTTCAGCCGAGT  4070

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 4071  TCAAGGCTGCAGTGAGCCATGATTGTACCACTGTACTCCAGCCAGGACAACAGAGTGAGACTCTTGTCTTTAAA  4144

Query 1813  ----------------------------  1812
                                        
Sbjct 4145  ATGAAAAAATAAATGTTTAATGAGAAAA  4172

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