Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12101
Subject:
NR_144329.1
Aligned Length:
4151
Identities:
1504
Gaps:
2647

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGACGCCACTGTCGCTGCGACGATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGCTGCAGCAGGGCGAGGCTCCAGGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCGGGACTTTCGCTACCTGTTGCGTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCTCCCGTTCGTTCCTCTGCCAGAGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGTACGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCCCTCCCCGGCGTCTCCGCTCCCCTGACCCCACATCCCCTAGAAGACCTTTTTTCTGAGCCTCGCTGCTCGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTCTTCTCGGCGCTCCCCGGTGGTCTCTTCCATTATGGTCCCCACCTCAGAAATTTTTTTTAACCGCTCCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGTCTCTTTTCTGTATTCTTACAACTTTGTGGCAACCACCTCTACTGGCCCCACTTCGACCTTCCTTCCTGATC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCACAAAGAGCCAGTTCTAACTGGACCACGCTGCCACCACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGTGTGAAATTTATGCCCTACACAACTTACCTTGTGGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCCACCTACAGTTACTATGCCTCGAATCAAGGCATTGAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GACGGGGAGCCTTCCTGGCTTTGTCGACGTCATCAGGAACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAAGACAAGCAAAAGCAGCTGGAAAAAGAATAGTCTTTTATGGAGATGAAACCTGGGTTAAATTATTCCCAAAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CATTTTGTGGAATATGATGGAACAACCTCATTTTTCGTGTCAGATTACACAGAGGTGGATAATAATGTCACGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCATTTGGATAAAGTATTAAAAAGAGGAGATTGGGACATATTAATCCTCCACTACCTGGGGCTGGACCACATTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCCACATTTCAGGGCCCAACAGCCCCCTGATTGGGCAGAAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CACACCTCACTGCAGTCGAAGGAGAGAGAGACGCCTTTACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTCTGAAACAGGAAGTCACGGGGCCTCCTCCACCGAGGAGGTGAATACACCTCTGATTTTAATCAGTTCTGCGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTGAAAGGAAACCCGGTGATATCCGACATCCAAAGCACGTCCAACAGACGGATGTGGCTGCGACACTGGCGATA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCACTTGGCTTACCGATTCCAAAAGACAGTGTAGGGAGCCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGAGCAGTTGAGATTTTTACATTTGAATACAGTGCAGCTTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATG  1480

Query    1  -----------------------------ATGTCAGAAAGATTGCATGGGAACTGGATCAGACTGTACTTGGAG  45
                                         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AAAAAGATCCTGGGTTTGAGCAGTTTAAAATGTCAGAAAGATTGCATGGGAACTGGATCAGACTGTACTTGGAG  1554

Query   46  GAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAAGGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCT  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAAGGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCT  1628

Query  120  GAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACATCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGG  193
            ||||||||||||||||||||||||||||||                                            
Sbjct 1629  GAGCTTGTCCCTGAGTGCACAAGTGGCCCA--------------------------------------------  1658

Query  194  AGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCA  267
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659  --GTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCA  1730

Query  268  TCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTC  341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731  TCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTC  1804

Query  342  AGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGC  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805  AGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGC  1878

Query  416  TGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCAT  489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879  TGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCAT  1952

Query  490  CCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGC  563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953  CCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGC  2026

Query  564  CAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAG  637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027  CAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAG  2100

Query  638  AAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAGCCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGAC  711
            ||||||||||||||||||||||||||||||||                                          
Sbjct 2101  AAACCTACAGAAACTACTTTCTGGGAGATGAC------------------------------------------  2132

Query  712  GGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGATGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTC  785
                                                                                      
Sbjct 2133  --------------------------------------------------------------------------  2132

Query  786  TACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGGTGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCC  859
                                                                                      
Sbjct 2133  --------------------------------------------------------------------------  2132

Query  860  GGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGGGCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGC  933
                                                                                    ||
Sbjct 2133  ------------------------------------------------------------------------GC  2134

Query  934  TCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGG  1007
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135  TCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGG  2208

Query 1008  GTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGA  1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2209  GTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGA  2282

Query 1082  GTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATTTCCAAGGGTATTATTGAAGCTCGTTTTGTTTATGTC  1155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283  GTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATTTCCAAGGGTATTATTGAAGCTCGTTTTGTTTATGTC  2356

Query 1156  TTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTACTTAAATCTCAAGTCATTGCTGCAGACTTCAAACT  1229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2357  TTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTACTTAAATCTCAAGTCATTGCTGCAGACTTCAAACT  2430

Query 1230  CAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAGTTCTTCTGGCAGCCTTGCTCTTTAGACCACATAATC  1303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431  CAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAGTTCTTCTGGCAGCCTTGCTCTTTAGACCACATAATC  2504

Query 1304  TTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTAATGACTAAATTCATCTGGAAGCCCCTGAGACACGAT  1377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2505  TTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTAATGACTAAATTCATCTGGAAGCCCCTGAGACACGAT  2578

Query 1378  GCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCAAGCATTCTTCTATTTTCAGGGCAACTCCAACAACAT  1451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579  GCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCAAGCATTCTTCTATTTTCAGGGCAACTCCAACAACAT  2652

Query 1452  TGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAG  1525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2653  TGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAG  2726

Query 1526  CGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGT  1599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2727  CGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGT  2800

Query 1600  GGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCCAGTTTTCACGTACATCGTTTT  1673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801  GGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCCAGTTTTCACGTACATCGTTTT  2874

Query 1674  GGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCTCCAAAACTTCTCTACGAGGGAATGCACC  1747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2875  GGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCTCCAAAACTTCTCTACGAGGGAATGCACC  2948

Query 1748  TGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCAAACCAGACTCACACAGTCT---------  1812
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct 2949  TGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCAAACCAGACTCACACAGTCTTAGACTAAG  3022

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3023  CTGAACACTGGAAAAATAATACATGCTTAAAGTCTGCTGTTATTCTAAAATGAAAGATATGAATTCAACAAAGT  3096

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3097  TGATGGATAACTTTCTTTGACTGCTCTACCTGAATTTAGACTAAGCAGTAAATAGTTTAATAAAAGATCACTTT  3170

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3171  AATATACAGTTTGTATCATATTTTCCCCCATTGACAATCACTCTAGAAGCTTCTGAACTTTTAATTTCCTCTGA  3244

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3245  ATAAGCTATGGTGTGACCCAAATATGTGTGTTTAAATCAATGAATGAAAAGGTTCTGGACTTTGTTAGAGTCCA  3318

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3319  GGAGCTCTGTGGGAGGAGGCACCCAGATTACCTTAGGGAGCACAGAGCTCTTAGAATCCTACAAACCACTGAGG  3392

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3393  GCCCCAAGGCGCTTTGGTTTATGAGGGTTACATGTATCAGTGTTTATGGCATTTGAGATGAAAACTAAGATAAA  3466

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3467  AAAGTATTCATTTATAAGGAATCTATTGCATATTAATGAAACACTTGAAGGAAAAGTAACTATATTTTCCAAAA  3540

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3541  CAAAAAAATTCAGTGAGACCCAGCACTTTGGGAGGCCAGAGTGGGGGTATCACTTGAGCCCAGGTGTTTGAGAT  3614

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3615  CAGCCTGGGAAACATAGTGAGACCCTCATCTCTCCAAAAACTTCAAAAAATTAGCTGGGCGTGATGGCACACAC  3688

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3689  CTGTGGTCCCAGCTACTCAGGTGGCTGAGGAAAGAGTATTGTTTCAGCCGAGTTCAAGGCTGCAGTGAGCCATG  3762

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3763  ATTGTACCACTGTACTCCAGCCAGGACAACAGAGTGAGACTCTTGTCTTTAAAATGAAAAAATAAATGTTTAAT  3836

Query 1813  -------  1812
                   
Sbjct 3837  GAGAAAA  3843

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