Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12101
Subject:
XR_001741248.2
Aligned Length:
3715
Identities:
1739
Gaps:
1934

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCGCGGCTGCAGCAGGGCGAGGCTCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGCTCCGGGACTTTCGCTACCTGTTGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCCGGCTCCCGTTCGTTCCTCTGCCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGAGCCAGTTCTAACTGGACCACGCTGCCAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAGATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGAAATTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCTACAGTTACTATGCCTCGAATCAAGGCATTGATGACGGGGAGCCTTCCTGGCTTTGTCGACGTCATCAGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGATAAGACAAGCAAAAGCAGCTGGAAAAAGAATAGTCTTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TATGGAGATGAAACCTGGGTTAAATTATTCCCAAAGCATTTTGTGGAATATGATGGAACAACCTCATTTTTCGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTCAGATTACACAGAGGTGGATAATAATGTCACGAGGCATTTGGATAAAGTATTAAAAAGAGGAGATTGGGACA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TATTAATCCTCCACTACCTGGGGCTGGACCACATTGGCCACATTTCAGGGCCCAACAGCCCCCTGATTGGGCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATCCACACCTCACTGCAGTCGAAGGAGAGAGAGACGCCTTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCATGTCTGAAACAGGAAGTCACGGGGCCTCCTCCACCGAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGGTGAATACACCTCTGATTTTAATCAGTTCTGCGTTTGAAAGGAAACCCGGTGATATCCGACATCCAAAGCAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTCCAACAGACGGATGTGGCTGCGACACTGGCGATAGCACTTGGCTTACCGATTCCAAAAGACAGTGTAGGGAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAGAGAGCAGTTGAGATTTTTACATTTGAATACAGTGCAGC  1184

Query    1  -----------------------------------------------------------------ATGTCAGAA  9
                                                                             |||||||||
Sbjct 1185  TTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATGAAAAAGATCCTGGGTTTGAGCAGTTTAAAATGTCAGAA  1258

Query   10  AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA  1332

Query   84  GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA  1406

Query  158  TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCA  231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCA  1480

Query  232  CTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCT  1554

Query  306  GGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGC  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGC  1628

Query  380  TGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTC  453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTC  1702

Query  454  GTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCT  527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCT  1776

Query  528  GTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACT  601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACT  1850

Query  602  TCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAG  675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAG  1924

Query  676  CCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGA  749
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGA  1998

Query  750  TGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGG  823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGG  2072

Query  824  TGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGG  897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGG  2146

Query  898  GCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGCTCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCT  971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGCTCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCT  2220

Query  972  CTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGC  1045
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGC  2294

Query 1046  TGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATT  1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  TGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATT  2368

Query 1120  TCCAAGGGTATTATTGAAGCTCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTT  1193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TCCAAGGGTATTATTGAAGCTCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTT  2442

Query 1194  ACTTAAATCTCAAGTCATTGCTGCAGACTTCAAACTCAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAG  1267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  ACTTAAATCTCAAGTCATTGCTGCAGACTTCAAACTCAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAG  2516

Query 1268  TTCTTCTGGCAGCCTTGCTCTTTAGACCACATAATCTTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTA  1341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TTCTTCTGGCAGCCTTGCTCTTTAGACCACATAATCTTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTA  2590

Query 1342  ATGACTAAATTCATCTGGAAGCCCCTGAGACACGATGCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCA  1415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  ATGACTAAATTCATCTGGAAGCCCCTGAGACACGATGCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCA  2664

Query 1416  AGCATTCTTCTATTTTCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAG  1489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  AGCATTCTTCTATTTTCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAG  2738

Query 1490  ACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGC  1563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  ACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGC  2812

Query 1564  CACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGTGG-----------TTC--AG------------CACTGA  1612
            |||||||||||||||||||||||||||||||||||.||           |||  ||            |.||| 
Sbjct 2813  CACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGCGGACATGGAGCCTTTCCAAGGGGAGAATCGCTCCCTG-  2885

Query 1613  GTCA---TGCTTGCTTC-------------TGCTACGCACTGA-------------TTTGTTCTA--TTCCAG-  1654
            |.||   |||..|||||             |||      ||||             |||.||| |  |.||.| 
Sbjct 2886  GCCAGACTGCAAGCTTCCCGGGGACAGGAATGC------CTGAGATCCACCTGCCTTTTCTTC-AGGTGCCTGT  2952

Query 1655  ------TTTTCACGTACATCGTTTTGGTGACA-TCTCTG----------CGTTATCATTTATTTATATG-----  1706
                  ||..||||..||   .||||| |.|| |||.||          ||       |.|||||.| |     
Sbjct 2953  GGACGCTTGACACGCCCA---CTTTGG-GGCAGTCTGTGGACAGACCCCCG-------TAATTTACA-GTCACC  3014

Query 1707  ---GAGTGTATTTTCTC----CAAAACT---TCTCTACGAG-GGAATGC---------ACCTGCTCATT-----  1755
               |||..|.|..||.|    .|||.||   .||||.||.| |||| ||         |||.||   ||     
Sbjct 3015  GCTGAGCTTGTCATCACAGCAGAAAGCTGAGGCTCTGCGGGCGGAA-GCCACCAACAGACCAGC---TTGGGAG  3084

Query 1756  ACAGCTGCTGT-------CTGTGT------ATTCTTC---ACGGCAA---TGGATCAAACCAGACTCACACAGT  1810
            |||.|..||||       ||||||      .|.||||   ||..|.|   ||.||.|||.||.||       .|
Sbjct 3085  ACACCCACTGTGGCGGCGCTGTGTGGAGACGTCCTTCCAGACTTCGATTCTGCATAAAAACAAAC-------AT  3151

Query 1811  CT------------------------------------------------------------------------  1812
            ||                                                                        
Sbjct 3152  CTGCCACGAGACCCCTGCTCGGCGTCCGCCTGTCTCAGCAGCTGCCCTGGGACGTCTTTCTCTGACTTGGTTTT  3225

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3226  GAGGCCAGCCGCGTGCTCACACTGGCCTTACAGAAACAGGAGACGCCGTCCTCGGCCGTCTGGGGTGGGCTGTC  3299

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3300  AGCACGTCGTGTGGTCAGGTGTCAGGACAAGCGGGCGTGAGCGCGTGGAGGTGCATCTGCCTCTGCCCTGGAGA  3373

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3374  ACGGATGTGCTACAGCTGTGCGCGGCGTGATCAAGCACCTGTTGGGTGGACGGCACACCTCCCAGTGGCCAGCT  3447

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3448  GGAGACGGAGGGCTGGAAGTACTTGCCCGGCTCCTCTCTCTGTAGGTTTGGTCTTCGGCCTTGCAGCTGCCCTG  3521

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3522  GTGCTTGCAGATTGCGGTTTGATGGACCAGGCACTTTTCATCTCTTACACAGCCAGTGGTTCAGCACTGAGTCA  3595

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3596  TGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCCAGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTT  3669

Query 1813  ---------------  1812
                           
Sbjct 3670  ATCATTTATTTATAT  3684

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