Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12101
Subject:
XR_001741253.2
Aligned Length:
3665
Identities:
1747
Gaps:
1887

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCGCGGCTGCAGCAGGGCGAGGCTCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGCTCCGGGACTTTCGCTACCTGTTGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCCGGCTCCCGTTCGTTCCTCTGCCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGAGCCAGTTCTAACTGGACCACGCTGCCAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAGATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGAAATTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCTACAGTTACTATGCCTCGAATCAAGGCATTGATGACGGGGAGCCTTCCTGGCTTTGTCGACGTCATCAGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGATAAGACAAGCAAAAGCAGCTGGAAAAAGAATAGTCTTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TATGGAGATGAAACCTGGGTTAAATTATTCCCAAAGCATTTTGTGGAATATGATGGAACAACCTCATTTTTCGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTCAGATTACACAGAGGTGGATAATAATGTCACGAGGCATTTGGATAAAGTATTAAAAAGAGGAGATTGGGACA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TATTAATCCTCCACTACCTGGGGCTGGACCACATTGGCCACATTTCAGGGCCCAACAGCCCCCTGATTGGGCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATCCACACCTCACTGCAGTCGAAGGAGAGAGAGACGCCTTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCATGTCTGAAACAGGAAGTCACGGGGCCTCCTCCACCGAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGGTGAATACACCTCTGATTTTAATCAGTTCTGCGTTTGAAAGGAAACCCGGTGATATCCGACATCCAAAGCAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTCCAACAGACGGATGTGGCTGCGACACTGGCGATAGCACTTGGCTTACCGATTCCAAAAGACAGTGTAGGGAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAGAGAGCAGTTGAGATTTTTACATTTGAATACAGTGCAGC  1184

Query    1  -----------------------------------------------------------------ATGTCAGAA  9
                                                                             |||||||||
Sbjct 1185  TTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATGAAAAAGATCCTGGGTTTGAGCAGTTTAAAATGTCAGAA  1258

Query   10  AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA  1332

Query   84  GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA  1406

Query  158  TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCA  231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCA  1480

Query  232  CTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCT  1554

Query  306  GGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGC  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGC  1628

Query  380  TGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTC  453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTC  1702

Query  454  GTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCT  527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCT  1776

Query  528  GTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACT  601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACT  1850

Query  602  TCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAACTACTTTCTGGGAGATGACGG---T  672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   .
Sbjct 1851  TCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAACTACTTTCTGGGAGATGACGGGACA  1924

Query  673  GAGCCTCCGTGTGG-------------CCT-CTG----TGTGGAACAAGGGCATGACGGG---GCCAC------  719
            |||   ||||||||             ||| |||    |.|    ||..|||  |||.||   .||||      
Sbjct 1925  GAG---CCGTGTGGGGGAATTCAGCCACCTCCTGAGCCTTT----CATTGGC--GACTGGAAAACCACCTAGAA  1989

Query  720  -----AGC-----------AGCGTGG---------------------CAGGACGG-------------------  737
                 |||           |||..||                     ||||||.|                   
Sbjct 1990  AGTATAGCAAATCATTTCAAGCAAGGCTCGAAATAAGTAGAAGAAACCAGGACAGAAAAATAACTAAGATTTGC  2063

Query  738  -------------------GCCTGGCTGTGATGTC---------------------------------------  753
                               |.|||||.||||.|.|                                       
Sbjct 2064  CGAGACTTAAATTTTAATTGTCTGGCAGTGAAGACTTAGGAAACTAAAGCAAAAGAAGCAGCACAATGAGAGCA  2137

Query  754  -CTGGAGCGAGA-------CAAAGG-------CC-------------------------------------ACG  775
             |||..||||||       |||.||       ||                                     |.|
Sbjct 2138  TCTGCGGCGAGAGTAACAGCAAGGGTTGCGGTCCCGTCACTGCAGAGAACTCCTGTAAGAAATGGCAGCAGAAG  2211

Query  776  GAA---------GCC----CCT-----------CTACCTCC--------GA-AG----------------TGCT  800
            |||         |||    |||           | ||.|||        || ||                ||||
Sbjct 2212  GAAAAGGGAAATGCCTAGTCCTAGTAATGAGGGC-ACTTCCAGTTAAATGACAGGGTGTGACTTCATACCTGCT  2284

Query  801  ----CAGAG--GCCG----------CGAGA---AGT----------------GGA----TGGTGC--------T  827
                |||||  ||.|          |||||   |||                |||    |||.||        |
Sbjct 2285  GAGGCAGAGAAGCAGAATTGAATGACGAGACTCAGTCTTGGTGAGCACGTGAGGATTCCTGGGGCCACGTTAGT  2358

Query  828  GGC-CAGTCC----------------------------------------------------------------  836
            ||| ||||.|                                                                
Sbjct 2359  GGCACAGTTCTTTTGGAAGATACTTGTAAGTTTACATCAGAAGCTGCGAAATTACAGATTCTTCTGATTAAGTA  2432

Query  837  ----------GTGGCTAA-------------TAC------------------------------TGG--CCT--  853
                      |.||||||             |||                              |||  |||  
Sbjct 2433  ATTCTTGTGGGAGGCTAAGCATTAACTAAATTACGAAAACCTCGGTTAGCCAAGTCATCGCAGATGGGTCCTTC  2506

Query  854  --GCTGCCGGCTG-----CTGCGC---TCCCTAAACCAGA------CAGGTGTGCAGTGGGCTCACCGGCCTGA  911
              .|||||.||||     ||||.|   |||.|  .|||||      |.||     ||.|||           ||
Sbjct 2507  TATCTGCCTGCTGTGTGCCTGCACGTTTCCTT--TCCAGAGAAGCCCCGG-----AGAGGG-----------GA  2562

Query  912  CCTCGG-------CCACTGGCTCACC--AGCTCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCTCTCCC  976
            |.|.||       |||||      ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2563  CTTTGGTTGGTCCCCACT------CCAGAGCTCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCTCTCCC  2630

Query  977  TCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGCTGCTG  1050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2631  TCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGCTGCTG  2704

Query 1051  GGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATTTCCAA  1124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2705  GGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATTTCCAA  2778

Query 1125  GGGTATTATTGAAGCTCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTACTTA  1198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2779  GGGTATTATTGAAGCTCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTACTTA  2852

Query 1199  AATCTCAAGTCATTGCTGCAGACTTCAAACTCAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAGTTCTT  1272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2853  AATCTCAAGTCATTGCTGCAGACTTCAAACTCAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAGTTCTT  2926

Query 1273  CTGGCAGCCTTGCTCTTTAGACCACATAATCTTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTAATGAC  1346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2927  CTGGCAGCCTTGCTCTTTAGACCACATAATCTTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTAATGAC  3000

Query 1347  TAAATTCATCTGGAAGCCCCTGAGACACGATGCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCAAGCAT  1420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3001  TAAATTCATCTGGAAGCCCCTGAGACACGATGCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCAAGCAT  3074

Query 1421  TCTTCTATTTTCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACC  1494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3075  TCTTCTATTTTCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACC  3148

Query 1495  TACGTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTT  1568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3149  TACGTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTT  3222

Query 1569  AGTGCACTTCCTGAGCTCAGAAACACGCAGTGGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTT  1642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3223  AGTGCACTTCCTGAGCTCAGAAACACGCAGTGGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTT  3296

Query 1643  GTTCTATTCCAGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTT  1716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3297  GTTCTATTCCAGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTT  3370

Query 1717  TCTCCAAAACTTCTCTACGAGGGAATGCACCTGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGA  1790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3371  TCTCCAAAACTTCTCTACGAGGGAATGCACCTGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGA  3444

Query 1791  TCAAACCAGACTCACACAGTCT----------------------------------------------------  1812
            ||||||||||||||||||||||                                                    
Sbjct 3445  TCAAACCAGACTCACACAGTCTTAGACTAAGCTGAACACTGGAAAAATAATACATGCTTAAAGTCTGCTGTTAT  3518

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3519  TCTAAAATGAAAGATATGAATTCAACAAAGTTGATGGATAACTTTCTTTGACTGCTCTACCTGAATTTAGACTA  3592

Query 1813  ---------------------------------------  1812
                                                   
Sbjct 3593  AGCAGTAAATAGTTTAATAAAAGATCACTTTAATATACA  3631

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