Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12101
Subject:
XR_001741259.2
Aligned Length:
3090
Identities:
901
Gaps:
2189

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCGCGGCTGCAGCAGGGCGAGGCTCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGCTCCGGGACTTTCGCTACCTGTTGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCCGGCTCCCGTTCGTTCCTCTGCCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGAGCCAGTTCTAACTGGACCACGCTGCCAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAGATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGAAATTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCTACAGTTACTATGCCTCGAATCAAGGCATTGATGACGGGGAGCCTTCCTGGCTTTGTCGACGTCATCAGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGATAAGACAAGCAAAAGCAGCTGGAAAAAGAATAGTCTTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TATGGAGATGAAACCTGGGTTAAATTATTCCCAAAGCATTTTGTGGAATATGATGGAACAACCTCATTTTTCGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTCAGATTACACAGAGGTGGATAATAATGTCACGAGGCATTTGGATAAAGTATTAAAAAGAGGAGATTGGGACA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TATTAATCCTCCACTACCTGGGGCTGGACCACATTGGCCACATTTCAGGGCCCAACAGCCCCCTGATTGGGCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATCCACACCTCACTGCAGTCGAAGGAGAGAGAGACGCCTTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCATGTCTGAAACAGGAAGTCACGGGGCCTCCTCCACCGAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGGTGAATACACCTCTGATTTTAATCAGTTCTGCGTTTGAAAGGAAACCCGGTGATATCCGACATCCAAAGCAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTCCAACAGACGGATGTGGCTGCGACACTGGCGATAGCACTTGGCTTACCGATTCCAAAAGACAGTGTAGGGAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAGAGAGCAGTTGAGATTTTTACATTTGAATACAGTGCAGC  1184

Query    1  -----------------------------------------------------------------ATGTCAGAA  9
                                                                             |||||||||
Sbjct 1185  TTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATGAAAAAGATCCTGGGTTTGAGCAGTTTAAAATGTCAGAA  1258

Query   10  AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA  1332

Query   84  GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA  1406

Query  158  TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGG-----------------------------AGGTTCTCA  202
            ||||||||||||||||||||||||||||||||||||                             |||||||||
Sbjct 1407  TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTACAGATGCTCACACAGTCATGGCTCAGGTTCTCA  1480

Query  203  CCCTGCTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGG  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CCCTGCTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGG  1554

Query  277  TTTTCTCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAG  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TTTTCTCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAG  1628

Query  351  TTCGTGCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTG  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TTCGTGCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTG  1702

Query  425  TGATTGTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCA  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGATTGTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCA  1776

Query  499  AGGTGGTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTT  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AGGTGGTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTT  1850

Query  573  CGTGGAGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACA  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CGTGGAGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACA  1924

Query  647  GAAACTACTTTCTGGGAGATGACGGTGAGCCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACA  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GAAACTACTTTCTGGGAGATGACGGTGAGCCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACA  1998

Query  721  GCAGCGTGGCAGGACGGGCCTGGCTGTGATGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGA  794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GCAGCGTGGCAGGACGGGCCTGGCTGTGATGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGA  2072

Query  795  AGTGCTCAGAGGCCGCGAGAAGTGGATGGTGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGC  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  AGTGCTCAGAGGCCGCGAGAAGTGGATGGTGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGC  2146

Query  869  GCTCCCTAAACCAGACAGGTGTGCAGTGGGCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGCTCTGACCAC  942
            |||||||||||||||||||||||||||||||||                                         
Sbjct 2147  GCTCCCTAAACCAGACAGGTGTGCAGTGGGCTC-----------------------------------------  2179

Query  943  AAAGCCGAGCTCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCC  1016
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1017  TGTGTCCAAGGCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGT  1090
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1091  TCCCGTGGCGGCCGGACAGCAAGGACATTTCCAAGGGTATTATTGAAGCTCGTTTTGTTTATGTCTTTGTCCTT  1164
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1165  GGCATTCTGTTCACGGGCACCAAAGACTTACTTAAATCTCAAGTCATTGCTGCAGACTTCAAACTCAAGACTGT  1238
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1239  AGGTTTATGGGAGATATATAGTGGATTAGTTCTTCTGGCAGCCTTGCTCTTTAGACCACATAATCTTCCGGTCT  1312
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1313  TAGCATTTAGCCTCTTGATTCAGACTCTAATGACTAAATTCATCTGGAAGCCCCTGAGACACGATGCAGCTGAG  1386
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1387  ATTACTGTGATGCATTATTGGTTTGGTCAAGCATTCTTCTATTTTCAGGGCAACTCCAACAACATTGCCACCGT  1460
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1461  GGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGA  1534
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1535  CGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGTGGTTCAGCA  1608
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1609  CTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCCAGTTTTCACGTACATCGTTTTGGTGACATC  1682
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1683  TCTGCGTTATCATTTATTTATATGGAGTGTATTTTCTCCAAAACTTCTCTACGAGGGAATGCACCTGCTCATTA  1756
                                                                                      
Sbjct 2180  --------------------------------------------------------------------------  2179

Query 1757  CAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCAAACCAGACTCACACAGTCT  1812
                                                                    
Sbjct 2180  --------------------------------------------------------  2179

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