Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12101
- Subject:
- XR_002959736.1
- Aligned Length:
- 4681
- Identities:
- 1703
- Gaps:
- 2890
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCGCGGCTGCAGCAGGGCGAGGCTCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGCTCCGGGACTTTCGCTACCTGTTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCCGGCTCCCGTTCGTTCCTCTGCCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGAGCCAGTTCTAACTGGACCACGCTGCCAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAGATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTGAAATTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCTACAGTTACTATGCCTCGAATCAAGGCATTGATGACGGGGAGCCTTCCTGGCTTTGTCGACGTCATCAGGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGATAAGACAAGCAAAAGCAGCTGGAAAAAGAATAGTCTTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TATGGAGATGAAACCTGGGTTAAATTATTCCCAAAGCATTTTGTGGAATATGATGGAACAACCTCATTTTTCGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCAGATTACACAGAGGTGGATAATAATGTCACGAGGCATTTGGATAAAGTATTAAAAAGAGGAGATTGGGACA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TATTAATCCTCCACTACCTGGGGCTGGACCACATTGGCCACATTTCAGGGCCCAACAGCCCCCTGATTGGGCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATCCACACCTCACTGCAGTCGAAGGAGAGAGAGACGCCTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCATGTCTGAAACAGGAAGTCACGGGGCCTCCTCCACCGAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGTGAATACACCTCTGATTTTAATCAGTTCTGCGTTTGAAAGGAAACCCGGTGATATCCGACATCCAAAGCAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTCCAACAGACGGATGTGGCTGCGACACTGGCGATAGCACTTGGCTTACCGATTCCAAAAGACAGTGTAGGGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAGAGAGCAGTTGAGATTTTTACATTTGAATACAGTGCAGC 1184
Query 1 -----------------------------------------------------------------ATGTCAGAA 9
|||||||||
Sbjct 1185 TTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATGAAAAAGATCCTGGGTTTGAGCAGTTTAAAATGTCAGAA 1258
Query 10 AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGATTGCATGGGAACTGGATCAGACTGTACTTGGAGGAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAA 1332
Query 84 GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACA 1406
Query 158 TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGGAGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCA 1480
Query 232 CTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCATCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCT 1554
Query 306 GGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTCAGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGC 1628
Query 380 TGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTC 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGCTGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTC 1702
Query 454 GTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTGGGTGGAAACACCCCAAGGAAGAACCCCATGCATCCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCT 1776
Query 528 GTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGCCAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACT 1850
Query 602 TCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAGAAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAG 1924
Query 676 CCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGACGGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGA 1998
Query 750 TGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGG 2072
Query 824 TGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCCGGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGG 2146
Query 898 GCTCACCGGCCTGACCTCGGCCACTGGCTCACCAG--------------CTCTGACCACAAAGCCGAG-CTCTC 956
||||||||||||||||||||||||||||||||||| |..||.|||| ||.|.|| ||.||
Sbjct 2147 GCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGGTGAGAGCGTAGGCCCGTGGCCAC--AGGCCAGACTTTC 2218
Query 957 T--GTCC---TGG----CTGCC---CTCTCCCTCCTC------------------------------------G 982
| |.|| ||| ||||| ||||.|.|..|| |
Sbjct 2219 TACGGCCGATTGGTCACCTGCCAAGCTCTTCTTTTTCTAAATTGAGACCATTTTTCATATTAAGAATGGGATAG 2292
Query 983 TAGTT--------------------------------------------------------------------- 987
||.||
Sbjct 2293 TATTTGAGATCTGAAGAATTGGGAAAATACACTAAAACCAGTGTTTTACTGGATACTAGAATCAATGTTGAGAA 2366
Query 988 ---------------------------------------TTTGTGCTG-------------GTGCA-------- 1001
||.|||||| ||.||
Sbjct 2367 GTGAATTTATTTGGGGGCTAGCCTAACAGGTTTCATTTATTAGTGCTGAACCACTGTAACTGTTCATGATTGAA 2440
Query 1002 ----------------------------------------GAGGGG---------------------------- 1007
|.||||
Sbjct 2441 AACTTGTGTTTCAGTGATCATTATATAGTAAAGATGCTATGTGGGGGTCAAGCTTGCTAGTGGCTTGTTCTGGA 2514
Query 1008 -----------------------GTGCTCC---------------------CCTGTGTCCAAGGC--------- 1028
||||.|| |||||||| ||||
Sbjct 2515 CGCCTCGTCCATGCCTGGGCTGTGTGCCCCCCGCCCATCACTCAGTGTCTGCCTGTGTC--AGGCCATTCGTGT 2586
Query 1029 --TGC------------CCTG-------------------------------------------GCGCTG-GGG 1044
||| |||| ||.||| |||
Sbjct 2587 GTTGCTATAAAGAAACACCTGAGGCCGGGTCACATGTAAGGAAAGAGGTTCATCTTGGCTCTCAGCTCTGCGGG 2660
Query 1045 CTGC---------------TGGGCGTCTACTGCT---------------ACCGGGCGGCCATCGGGAGTG---- 1084
|||| |.|||.|||.||.|| |.|.|||||.|||.|.|||.|
Sbjct 2661 CTGCACAGGAGGCATGGTGTCGGCATCTGCTCCTGGAGAGGCCTCAGGAAACTGGCGGTCATGGCGAGGGCAAA 2734
Query 1085 TCCGG---------TTCCCGTGGCG---GCCGG----------------------------------------- 1105
.|.|| |||.||||||| ||.||
Sbjct 2735 GCAGGAGCCAGCACTTCACGTGGCGAGAGCAGGAGAAAGAGAGGGATGAGGAGGGTGTCCGGCACTTTTAAACA 2808
Query 1106 ---------------------ACAGCAAGGA------CATTTC------------------------------- 1121
|||||.||.| ||||.|
Sbjct 2809 TCAGCTCTCTTGTGAACAGCCACAGCGAGAATGCGCTCATTACTGCGAAGATGGCACCAAGCCATTCGTGAGGA 2882
Query 1122 -----------------------------CAAGGGT-------ATTATTGAAG-------CTCGTTTTGTTTAT 1152
|||||.| |..|.||.|| .||.||||.|||.|
Sbjct 2883 ATCTGCCCCCATGACCCAGACGTCTCCCACAAGGCTCACTTCCAACACTGGAGGTTCAGTGTCTTTTTTTTTTT 2956
Query 1153 -----------GT----CTTTGTC---------------------------CTTGGC----------------A 1168
|| ||.|||| |||||| |
Sbjct 2957 TCTGAAACGGAGTTTCACTCTGTCACCCATGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAATCAAGAGA 3030
Query 1169 TTCT--------------------------GTTCACGGGC-------ACCAAAGACT---TA------------ 1194
|||| |.|.||.||| ||| |.|.|| ||
Sbjct 3031 TTCTCCTGTCTCAGCCCCCTGAGTAGCTGGGATTACAGGCGCCCGCTACC-ATGCCTGGCTAATTTTTGTGTTT 3103
Query 1195 ---------------------------------------CTTAA-------ATCTCAAGTCAT----------- 1211
|||.| |.|||||||.||
Sbjct 3104 TTAGTGGAGATGGGGTGTCACCATGTTGGCTGGGCTGGCCTTGAACTCCTGACCTCAAGTGATCCACCCACCTC 3177
Query 1212 ------------TGCTG------CAGACTTCA--AACT----CAAGACTGTAGGT-----TT--ATGGGAGATA 1254
||||| |||.|.|.| .||| |.||.|||.|||| || ||..|||||.
Sbjct 3178 GGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCCTGAAGGTCCAAGTTCAATATGAGATT 3251
Query 1255 TATAGTGGA----------------------------------------------------------------- 1263
|..||||||
Sbjct 3252 TGCAGTGGACAAACATCTAAGCCATGTCATTCCCCCAGACCCCTATCCTGCTGCTGATGATCCCCAGGGCAGCA 3325
Query 1264 ---------------------------------------------------------TTAG----------TTC 1270
|||| |||
Sbjct 3326 AGAAGGACGGGGTCAGCCAGGCAAGGCAGGCGCAGCCTCTGTGGGCCAGCTTTGCCCTTAGCAAAGCTCCTTTC 3399
Query 1271 TTCTGGC------------------------------------------------------------------- 1277
|.||..|
Sbjct 3400 TCCTCCCCATCCTCCCTTTTCTCTCTCCTCATCCTGAAGGGACAGAGCCGTGTGGGGGAATTCAGCCACCTCCT 3473
Query 1278 -AGCCTT-----------------------------------------------------GCTC---------- 1287
|||||| ||||
Sbjct 3474 GAGCCTTTCATTGGCGACTGGAAAACCACCTAGAAAGTATAGCAAATCATTTCAAGCAAGGCTCGAAATAAGTA 3547
Query 1288 ------------------------------TTT----AGAC--------------------------------- 1294
||| ||||
Sbjct 3548 GAAGAAACCAGGACAGAAAAATAACTAAGATTTGCCGAGACTTAAATTTTAATTGTCTGGCAGTGAAGACTTAG 3621
Query 1295 ----------------------CACA------------------------------------------------ 1298
||||
Sbjct 3622 GAAACTAAAGCAAAAGAAGCAGCACAATGAGAGCATCTGCGGCGAGAGTAACAGCAAGGGTTGCGGTCCCGTCA 3695
Query 1299 -----------------------------------------------------------TAAT-------CTTC 1306
|||| ||||
Sbjct 3696 CTGCAGAGAACTCCTGTAAGAAATGGCAGCAGAAGGAAAAGGGAAATGCCTAGTCCTAGTAATGAGGGCACTTC 3769
Query 1307 CGGT-----------------CTT-----------------------AGCATTTA------------------- 1321
|.|| ||| ||.|||.|
Sbjct 3770 CAGTTAAATGACAGGGTGTGACTTCATACCTGCTGAGGCAGAGAAGCAGAATTGAATGACGAGACTCAGTCTTG 3843
Query 1322 -----------------------GCC----------------TCTT------GAT---------------TCAG 1335
||| |||| ||| ||||
Sbjct 3844 GTGAGCACGTGAGGATTCCTGGGGCCACGTTAGTGGCACAGTTCTTTTGGAAGATACTTGTAAGTTTACATCAG 3917
Query 1336 A--CT-------------------------------------------CTAA----TGACTAAATT-------- 1352
| || |||| |.||||||||
Sbjct 3918 AAGCTGCGAAATTACAGATTCTTCTGATTAAGTAATTCTTGTGGGAGGCTAAGCATTAACTAAATTACGAAAAC 3991
Query 1353 ----------------------------------CATCTG--------------------------------GA 1360
.||||| ||
Sbjct 3992 CTCGGTTAGCCAAGTCATCGCAGATGGGTCCTTCTATCTGCCTGCTGTGTGCCTGCACGTTTCCTTTCCAGAGA 4065
Query 1361 AGCCCCTGAGA-------------------CAC----GATGC-----------AGCTGAGATTACTGT----GA 1396
||||||.|||| ||| || || |||.|||.|..|||| |.
Sbjct 4066 AGCCCCGGAGAGGGGACTTTGGTTGGTCCCCACTCCAGA-GCTCTGACCACAAAGCCGAGCTCTCTGTCCTGGC 4138
Query 1397 TGC----------------ATTATTGGTTTGGT------------------------CAAGCAT---------- 1420
||| .||.|||...|||| ||||..|
Sbjct 4139 TGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGGGTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGC 4212
Query 1421 ---------------TCTTCT----------------------------------------------------- 1426
|||.||
Sbjct 4213 TGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCGGTTCCCGTGGCGGCCGGACAGCAAG 4286
Query 1427 ---ATTTTCAGGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTAC 1497
||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4287 GACATTTCCAAGGCAACTCCAACAACATTGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTAC 4360
Query 1498 GTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGT 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4361 GTGGAAATCCCAGCCGTGCTCCTGACAGCGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGT 4434
Query 1572 GCACTTCCTGAGCTCAGAAACACGCAGTGGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTT 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4435 GCACTTCCTGAGCTCAGAAACACGCAGTGGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTT 4508
Query 1646 CTATTCCAGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCT 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4509 CTATTCCAGTTTTCACGTACATCGTTTTGGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCT 4582
Query 1720 CCAAAACTTCTCTACGAGGGAATGCACCTGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4583 CCAAAACTTCTCTACGAGGGAATGCACCTGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCA 4656
Query 1794 AACCAGACTCACACAGTCT 1812
||||
Sbjct 4657 AACC--------------- 4660