Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12273
Subject:
NM_053072.3
Aligned Length:
4201
Identities:
979
Gaps:
3077

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGACTTCTGCCGCGGAGCTTAAGAAGCCACCATTGGCTCCCAAGCCAAAGTTAGTGGGGACCAATAATAAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCTCCCCCTCCTATTGCACCTAAACCGGACATTGGCAGTGCTAGTGTTCCACGGTTAACGAAGAAGACCAAAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGCAATTGCGCCAAAACCAAAAGTCCCGACAAACTCAGTTGTTCAAGACATTAAGCATCCACCCTCAAAGAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCTACTTTGAACCTGGAGGAAAGGGAGCCAGAATTACCCGAGAGCACTGGCAAGTCTAATTGCAAGGATGTCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGATCCACACAGTGATTATATTTTACCAACGTGTTCCTGCAGTTCTGGGTGTATTCACGAGCCTAGGACTCGAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAACCCAGTGTGTAGAGCAGCTTGTTTTAGAGCCTCTGGGAATGAAGGAAAATTTAGAGAATAGTAAAAATGGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAGTCCTCAAAAAGGGGGAGTAGCTGGGATTCAAGCAGCGAAAAGTGCCGGGGCCAGAGTGGAGTTGTTTTAAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGCAAGCATCTTAGAAGAGAAGCTCAAAGAGGTCCTGACGCAGCAGCGATCACCTTGTGGTTCCCCGGGGAGGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACAGAGCTCCAAAAAAACCAGAAATGAATGGTGACCATAGTTGCACCAGGCAGATCAGAATTGAATTTGCAGAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTGTCTTCTTCCCTGACCGGCTTTGAAAAAGTTCCCGCTCATCACAACTGCCACCCACAACTTCCTAGGGATGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATCTCAGACTCTCAAGACTTGTCAAGATGGCAGTGCAGAGAGCCGTGGTCACACTGATTCATGTGAACCGGAGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACAAAAGAGTGGCTTCAGATGGAATTAGTCAGAAGACAGAGGTCAAAGGTCTCGGTCCTTTAGAAATCCACTTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCATGTAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGAACTCAAACAATGGCTCTTCTTGCCTCCTGGAGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATTATTGTTTGAAAAACAATAAAGTCAGTGTTCTTCGTCAGAATGCTTTGTATAACCAGGGACCAGTGGACGAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTGAGGCCAGCAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCGGACAGGACTCAGTCGGCTCACAGAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGCTGTGCAGCAGCAAACGCCTTCTTTAGATACAGATTCTAGTTTGACTTCTGACAGCAGTGGTTCTGGCGTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACCTGCTGTGGACAAAGAGACTACTTACACACAGTGCAGTACTCAGCCTTTGAGCTTGCCTAAGCAAGTCACA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCAGCCTGCACTGACCAGCCACCAGCTACCTGTAACCCGGAAGTGTCAGCTCCTCCCATACAAAAGGAATCTTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTCCTCGAGAATCATTCCCAAAAAACCTCAAAGACACAGCTTGCCTGCAGCAGGGGTGCTTAAAAAGGCTGCTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CGGAGGAGCTTGTAGAAAAGAGCTCTTCAGGTAAGGAGACAAATGTCGAGAAAGGTCTGCACAGAAACTACCTT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACCATCCGGGGCCCCCAAACCATGGCGCGTCAGCATCACCCTTTGATATGCCCAACCCGACTTCAGAGAAGCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGTGTGGAAGTTACCTCATCCTATTCTACCTTTTTCAGGGAGCCCAGAGGCCTTGAAACGCGTCACTTTATCCT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TAAATAACGAGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATCCCTGTCTGCCGTGGATGCGGACCGGTGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AACAAGCCTTGCAAAGACCCTCCGAAGAAAACTTCTTTTAAAAAGTTGATCAATGTGAAACTGTCCATTGGCTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CATAAAGAGCGACTTTCAGAAAATTAGGTCGAAAAGCTGCCAACACGGGGATGTCTCTGCAGGACATCCGCTCG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTAGAGAGCCAAAAGGACTTGAAAGTGATTGGCAAGGTTTGGCTACAGGAGAAGAGAAGAGAAGTAAGCCCACG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAGGCACATTCTGCAGAAAACTGCAGCCTGGAATCTCAAAAGGTGAAGTCCTGGGGCCAGAGCAGTGCAGTTAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CGGTCAGAGGGCGGAGTCTTTGGATGACCGGATTCTCTCCAGGCACACGTCCTGTACAGGCGACTTCGGGCCAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGTATGAAAATGTCCGCCATTATGAGGAGATACCCGAGTATGAGAATTTGCCCTTTGTCATGGCTGGAAGGAAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACTCCGGACTTGGGATGGCAGAACTCCAGCAGTGTGGAGGACACTGATGCAAGTCTATATGAAGTAGAAGAGCC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CTACAATGCTCCAGATGGCCAGCTGCAACTTGATCCTAGACATCAGCCTTGCAGTTCTGGAACATCCCAGGAGG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GGAAGGATGCTCTCCATCTTGGCCTCAGTGACCTGCCTTCTGATGAGGAAGTCATCAATAGTTCTGATGAAGAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GATGTCAGCTCCGAGTCCAGTAAAGGCGAGCCAGACCCCCTGGAGGATAAACAGGATGAAGATGCTGGGATGAA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAGCAAAGTTCATCATATTGCCAAGGAGATCATGAGCTCCGAGAAAGTGTTTGTGGATGTGTTAAAGCTTTTGC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGACCGGATCCTT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AACCAGATCCTGTACTACCTGCCTCAGCTGTACGAGCTCAACCGGGATCTCCTGAAGGAACTGGAAGAGCGAAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GCTCACCTGGACAGAACAACAAAGAATTGCTGATATCTTTGTAAAGAAGGGGCCATACTTAAAAATGTATTCCA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CATACATCAAAGAATTTGATAAGAACGTAGCTTTGCTGGATGAGCAGTGCAAGAAAAATCCAGGATTTGCTGCA  2886

Query    1  ------------------ATGAGCCCTCGCTGTGCTAATCTGGCCCTCAAGCACTACCTGCTCAAGCCGGTTCA  56
                              |||||||||||.|||||.||.||||||||.||||||||||||||.|||||.|||||
Sbjct 2887  GTTGTCAGAGAATTCGAGATGAGCCCTCGATGTGCCAACCTGGCCCTGAAGCACTACCTGCTAAAGCCAGTTCA  2960

Query   57  GAGGATCCCCCAGTACAGGCTGTTGCTGACAGATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAG  130
            |||||||||.||||||||||||.|.|||||||||||.||.|||||.||..|||||||..|||.||||.||||||
Sbjct 2961  GAGGATCCCTCAGTACAGGCTGCTACTGACAGATTACTTAAAGAACCTTCTAGAAGACTCTGTAGATCACAGAG  3034

Query  131  ACACTCAAGATGCCCTTGCTGTTGTTGTAGAGGTAGCCAACCACGCCAATGACACCATGAAGCAAGGAGACAAC  204
            ||||.|||||||||||.||||||||..||||||||||.|||||.|||||||||||||||||||||||.||||||
Sbjct 3035  ACACCCAAGATGCCCTGGCTGTTGTCATAGAGGTAGCTAACCATGCCAATGACACCATGAAGCAAGGGGACAAC  3108

Query  205  TTTCAGAAACTTATGCAAATTCAGTACAGCTTAAATGGACACCATGAAATTGTGCAGCCTGGTCGGGTTTTTCT  278
            ||||||||.||.|||||.||||||||||||||||.|||||||||||||||||||||.||.||.|||||||||||
Sbjct 3109  TTTCAGAAGCTCATGCAGATTCAGTACAGCTTAAGTGGACACCATGAAATTGTGCAACCCGGGCGGGTTTTTCT  3182

Query  279  CAAAGAAGGAATTCTGATGAAGCTGTCTCGGAAAGTGATGCAACCTCGAATGTTTTTCCTGTTTAATGATGCCC  352
            .||||||||.|..|||||||||||||||||||||||.|||||.||.||.|||||||||||||||||.|||||.|
Sbjct 3183  TAAAGAAGGCACCCTGATGAAGCTGTCTCGGAAAGTCATGCAGCCCCGGATGTTTTTCCTGTTTAACGATGCTC  3256

Query  353  TGCTGTATACAACACCAGTGCAGTCTGGGATGTATAAACTGAACAACATGCTCTCACTGGCTGGAATGAAGGTC  426
            |.||.||.||.|||||..||||||||||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 3257  TTCTCTACACCACACCCATGCAGTCTGGGATGTACAAACTGAACAACATGCTCTCGCTGGCTGGAATGAAGGTC  3330

Query  427  AGAAAACCTACCCAAGAAGCCTATCAGAATGAATTAAAGATTGAAAGTGTAGAACGTTCCTTCATTCTCTCAGC  500
            ||||||||||||||.||.||.||||||||.||.||||||||||||||||||||.|||||.|||||.||||||||
Sbjct 3331  AGAAAACCTACCCAGGAGGCATATCAGAACGAGTTAAAGATTGAAAGTGTAGAGCGTTCTTTCATCCTCTCAGC  3404

Query  501  CAGTTCTGCCACAGAAAGGGATGAATGGCTAGAAGCGATTTCCAGGGCAATAGAAGAGTATGCCAAGAAAAGAA  574
            .|||||||||.|||||||.|||||.|||||.||.||.||.|||||..|.|||||||||||||||||||||||||
Sbjct 3405  TAGTTCTGCCGCAGAAAGAGATGACTGGCTGGAGGCCATATCCAGCTCCATAGAAGAGTATGCCAAGAAAAGAA  3478

Query  575  TCACCTTCTGTCCTAGTAGGAGTCTTGATGAGGCAGACTCAGAAAATAAAGAAGAAGTTAGTCCTCTTGGATCG  648
            ||||.|||||.||.||.|||||||||||.|||   ||||||||||..||||||||||||||.||.||.||..|.
Sbjct 3479  TCACATTCTGCCCCAGCAGGAGTCTTGACGAG---GACTCAGAAAGGAAAGAAGAAGTTAGCCCCCTCGGGGCA  3549

Query  649  AAGGCTCCCATCTGGATTCCTGATACCAGAGCCACAATGTGTATGATCTGCACAAGCGAATTCACTCTCACCTG  722
            |||||||||||||||||.||.||.|||||||||||.|||||||||||.||||||||.||||||||.||.|||||
Sbjct 3550  AAGGCTCCCATCTGGATCCCAGACACCAGAGCCACCATGTGTATGATTTGCACAAGTGAATTCACCCTGACCTG  3623

Query  723  GAGACGACACCACTGCCGGGCCTGTGGAAAGATTGTATGCCAAGCTTGTTCGTCTAATAAGTATGGCTTAGATT  796
            ||||.|||||||||||.||||||||||.||||||||.|||||||||||.||.||.||.||||||||||||||||
Sbjct 3624  GAGAAGACACCACTGCAGGGCCTGTGGGAAGATTGTGTGCCAAGCTTGCTCATCAAACAAGTATGGCTTAGATT  3697

Query  797  ACCTGAAAAATCAACCAGCAAGAGTATGTGAACATTGTTTCCAAGAACTGCAGAAATTAGATCACCAGCACTCC  870
            ||||||||...||||..||||||||.||.||.||.||.||||||||.||.|||||||||||||||||||..||.
Sbjct 3698  ACCTGAAAGGGCAACTGGCAAGAGTGTGCGAGCACTGCTTCCAAGAGCTACAGAAATTAGATCACCAGCTGTCG  3771

Query  871  CCTAGGATTGGATCTCCTGGAAATCACAAATCTCCTTCAAGTGCCTTATCATCAGTCTTACATAGCATTCCATC  944
            ||||||.||||.|||||.|||||||||||.|||||||||||||||||.||.|||||||||||||||||.||.||
Sbjct 3772  CCTAGGGTTGGGTCTCCCGGAAATCACAAGTCTCCTTCAAGTGCCTTGTCGTCAGTCTTACATAGCATCCCGTC  3845

Query  945  AGGGAGGAAACAGAAAAAAATCCCAGCTGCTCTCAAAGAAGTATCAGCAAACACAGAGGATTCTTCTATGAGTG  1018
            |||||||||.|||||.||||||||.|||||||||||||||||.||||||||||||||.||.||..|||||||.|
Sbjct 3846  AGGGAGGAAGCAGAAGAAAATCCCCGCTGCTCTCAAAGAAGTGTCAGCAAACACAGAAGACTCCACTATGAGCG  3919

Query 1019  GCTACTTGTACAGATCAAAGGGCAATAAAAAACCCTGGAAACACTTTTGGTTTGTCATAAAAAATAAAGTACTA  1092
            |||||.|.||||||||.|||||||.||||||.||.|||||||||||.|||||||||||.|||||.||||||||.
Sbjct 3920  GCTACCTCTACAGATCCAAGGGCAGTAAAAAGCCATGGAAACACTTATGGTTTGTCATCAAAAACAAAGTACTC  3993

Query 1093  TATACATATGCTGCAAGTGAGGTA------AGATCTG--AAATC------------------------------  1128
            ||.||||||||||||||.|||| |      ||.|.||  ||.||                              
Sbjct 3994  TACACATATGCTGCAAGCGAGG-ACGTGGCAGCTTTGGAAAGTCAGCCTTTATTAGGCTTCACCGTCACTCTAG  4066

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4067  TCAAGGATGAGAACTCAGAGTCTAAAGTGTTTCAGCTGCTGCACAAAGGCATGGTGTTTTACGTATTTAAGGCA  4140

Query 1129  ---------------------------------------------------------  1128
                                                                     
Sbjct 4141  GACGATGCCCACTCCACGCAGAGGTGGATAGACGCATTTCAGGAAGGCACAGTATTG  4197

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