Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12714
Subject:
NR_110047.2
Aligned Length:
1868
Identities:
1165
Gaps:
648

Alignment

Query    1  ATGATTGATGTTT-CTCAGGCGGTGTGCTGGCGTTCCATGCGA--CGTGGCTGTGCAGTG-CTGGGAG-CCCTG  69
                   |..||| .|||      .||||||     |.||.||  .|..||.|..||.|| ||.|.|| |||||
Sbjct    1  -------AGCTTTAATCA------ATGCTGG-----CCTGAGAACAGGAGCGGAACATTGCCTAGTAGACCCTG  56

Query   70  GGGCTGCTGGC--CGGTGCAGGTGTTGGCTCA-TGGCTCCTA-GTGCTGTATCTGTGTCCTGCTGCCTCTCAGC  139
            .||||  |..|  |.||||           || ||.|.|||| |||||||||||||||||||||||||||||||
Sbjct   57  AGGCT--TTACAACAGTGC-----------CACTGACCCCTATGTGCTGTATCTGTGTCCTGCTGCCTCTCAGC  117

Query  140  CCATTTCCGGGACCTTGCAGGATGAGGAGATAACTTTGAGCTGCTCAGAGGCCAGCGCTGAGGAAGCTCTGCTC  213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  CCATTTCCGGGACCTTGCAGGATGAGGAGATAACTTTGAGCTGCTCAGAGGCCAGCGCTGAGGAAGCTCTGCTC  191

Query  214  CCTGCACTTCCCAAAACAGTATCTTTCAGAATAAACAGCGAAGACTTCTTGCTGGAAGCGCAAGTGAGGGATCA  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  CCTGCACTTCCCAAAACAGTATCTTTCAGAATAAACAGCGAAGACTTCTTGCTGGAAGCGCAAGTGAGGGATCA  265

Query  288  GCCACGCTGGCTCCTGGTCTGCCATGAGGGCTGGAGCCCCGCCCTGGGGCTGCAGATCTGCTGGAGCCTTGGGC  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  266  GCCACGCTGGCTCCTGGTCTGCCATGAGGGCTGGAGCCCCGCCCTGGGGCTGCAGATCTGCTGGAGCCTTGGGC  339

Query  362  ATCTCAGACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAGTTCCCAGGAGTTTGCTCAG  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  340  ATCTCAGACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAGTTCCCAGGAGTTTGCTCAG  413

Query  436  CTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAGGAACAACTGCACTTCTGGTCAAGTTGT  509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  CTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAGGAACAACTGCACTTCTGGTCAAGTTGT  487

Query  510  TTCCCTCAGATGCTCTGAGTGTGGAGCGAGGCCCCTGGCTTCCCGGATAGTTGGTGGGCAGTCTGTGGCTCCTG  583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  488  TTCCCTCAGATGCTCTGAGTGTGGAGCGAGGCCCCTGGCTTCCCGGATAGTTGGTGGGCAGTCTGTGGCTCCTG  561

Query  584  GGCGCTGGCCGTGGCAGGCCAGCGTGGCCCTGGGCTTCCGGCACACGTGTGGGGGCTCTGTGCTAGCGCCACGC  657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  562  GGCGCTGGCCGTGGCAGGCCAGCGTGGCCCTGGGCTTCCGGCACACGTGTGGGGGCTCTGTGCTAGCGCCACGC  635

Query  658  TGGGTGGTGACTGCTGCACATTGTATGCACAGTTTCAGGCTGGCCCGCCTGTCCAGCTGGCGGGTTCATGCGGG  731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  636  TGGGTGGTGACTGCTGCACATTGTATGCACAGTTTCAGGCTGGCCCGCCTGTCCAGCTGGCGGGTTCATGCGGG  709

Query  732  GCTGGTCAGCCACAGTGCCGTCAGGCCCCACCAAGGGGCTCTGGTGGAGAGGATTATCCCACACCCCCTCTACA  805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  710  GCTGGTCAGCCACAGTGCCGTCAGGCCCCACCAAGGGGCTCTGGTGGAGAGGATTATCCCACACCCCCTCTACA  783

Query  806  GTGCCCAGAATCATGACTACGACGTCGCCCTCCTGAGGCTCCAGACCGCTCTCAACTTCTCAGACACTGTGGGC  879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  784  GTGCCCAGAATCATGACTACGACGTCGCCCTCCTGAGGCTCCAGACCGCTCTCAACTTCTCAGACACTGTGGGC  857

Query  880  GCTGTGTGCCTGCCGGCCAAGGAACAGCATTTTCCGAAGGGCTCGCGGTGCTGGGTGTCTGGCTGGGGCCACAC  953
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  858  GCTGTGTGCCTGCCGGCCAAGGAACAGCATTTTCCGAAGGGCTCGCGGTGCTGGGTGTCTGGCTGGGGCCACAC  931

Query  954  CCACCCTAGCCATACTTACAGCTCGGATATGCTCCAGGACACGGTGGTGCCCCTGCTCAGCACTCAGCTCTGCA  1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||
Sbjct  932  CCACCCTAGCCATACTTACAGCTCGGATATGCTCCAGGACACGGTGGTGCCCTTGTTCAGCACTCAGCTCTGCA  1005

Query 1028  ACAGCTCTTGCGTGTACAGCGGAGCCCTCACCCCCCGCATGCTTTGCGCTGGCTACCTGGACGGAAGGGCTGAT  1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006  ACAGCTCTTGCGTGTACAGCGGAGCCCTCACCCCCCGCATGCTTTGCGCTGGCTACCTGGACGGAAGGGCTGAT  1079

Query 1102  GCATGCCAGG------------GAGAT---------------AG-----------------------------C  1119
            ||||||||||            ||| |               ||                             |
Sbjct 1080  GCATGCCAGGACTCCCTCCTCTGAG-TCCTGCTGTTTCCTCCAGTCTCACTGCACACCACTGCCTCATGCTTCC  1152

Query 1120  GGGGGC-----------CCCCTAGTG-------------TGCC-------CAGATGGGGACACATGG-----CG  1157
            .|||||           ||.|||.||             .|||       ||||     ||.|||||     |.
Sbjct 1153  TGGGGCCTCCAGCAGCTCCACTAATGGAGGAGAGGCAGTAGCCTCCGACACAGA-----ACGCATGGACCTCCT  1221

Query 1158  CCTAGTGGGGGTG-------GTCAGCTGGGGGCGTGGCTGCGCAGAGCCCAATCACC-------CAGGTGTCTA  1217
            .|||.||.|.|||       ||||             ||.|.||..|.|||..||||       |||||.|||.
Sbjct 1222  ACTACTGTGTGTGAGGAACAGTCA-------------CTACCCACTGGCCAGCCACCCAGCCAACAGGTCTCTC  1282

Query 1218  C------GCCAAGGTAGCTGAG-----TTTCTGGACTGGA---TCCATGACA---------CTGCTCAGGACT-  1267
            |      |||..|.|..|.|||     ||||| .|||.||   ||.||||||         |||    ||||| 
Sbjct 1283  CTCTTGGGCCCTGATTTCAGAGTCCTCTTTCT-CACTAGAGACTCAATGACAGAAGAGAGGCTG----GGACTT  1351

Query 1268  ------CCCTCCTC------------------------------------------------------------  1275
                  .|.|.||.                                                            
Sbjct 1352  GGTTGGGCATGCTGTGGTTGCTGAGGGATGAGGGGGAGGAGAGAGGTAGGAGCTGGAGATGAAGAGGCTGCTAG  1425

Query 1276  --------------------------------------------------------------------------  1275
                                                                                      
Sbjct 1426  AAGCAGCAGGAAGCCTGCCCTTCTGCCCTCTCCCCTCCCTGCCCCTGTGTGAGTCTTTTGGGAGGGTGCTGGGA  1499

Query 1276  --------------------------------------------------------------------------  1275
                                                                                      
Sbjct 1500  GGTGCCCCCCGTCCCACCTTTTTCCTGTGCTCTAGGTGGGCTAAGTGCCTCCCTAGAGGACTCCATGGCTGAGA  1573

Query 1276  --------------------------------------------------------------------------  1275
                                                                                      
Sbjct 1574  GGCTCCTGGGCAGATGGGGTCAAGGCTGGGCCAGCCCAGATGAAGCCTATGGGAGTCAGGACCCTCTCCACTCT  1647

Query 1276  --------------------------------------------------------------------------  1275
                                                                                      
Sbjct 1648  CCCTCTCCACTCCCCTTCCTGTTCTCACCTGGCTGTGGCTGGCCCTGTGTGGGGTGGGTACACTGGAAAACAAG  1721

Query 1276  --------------------------------------------------------------------------  1275
                                                                                      
Sbjct 1722  AAGGTTGGAGTTGGTCTAGGACATTGGTTTTAAATGACAGTTCTGTGAACTGGTCCAAGGAGTTCTGTTATTAA  1795

Query 1276  ------------------  1275
                              
Sbjct 1796  AGTGATATATGGTCTTGG  1813

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