Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12938
Subject:
XR_001753716.2
Aligned Length:
3790
Identities:
241
Gaps:
3516

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGACCAGGAAGCGGATCCCGTGGAGTGAAGGTCGCACCGCGGCGGATTGACTTCTAAAGACTTGGTACGTGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGGGTCTACTGACATTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAAGCACTCATGACAAAAACCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTTGCATGCCATAGATGTCACACTGGTGAGAATCCTTACACGTGTAATGAGTGTGGCAAGACATTCAGTCACAA  962

Query    1  --------------------------------------------------------ATGAATGTGGCAAGGTTT  18
                                                                    ||||||||||||||||||
Sbjct  963  TTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTT  1036

Query   19  TTAATCAAAAAGCAACCTTTGCACATCACCATAGACTTCATACTGGAGAGAAACCTTACAAATGGGAGGAATGT  92
            ||||||||.||.|||.|.||||||.|||.||||||.||||||||||||||||||||||||||||.||.||||||
Sbjct 1037  TTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGT  1110

Query   93  GACAAAAGTTTTCAGTTGTAAATCAAACCTTAAAACACATAAGAAAATTCACATTGAAGAGAAACCATACAGAG  166
            ||| ||||||||||||.|.||||||.|||||.|||.|||||.||.||||||||.||.||||||||||||||.|.
Sbjct 1111  GAC-AAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAAT  1183

Query  167  GTAAGGTTTGTGACAAGGTTTTTGCATA--TAATGCATATCTGGCAAAACATACTAGAATTCACACTGGAGAGA  238
            ||||||||||||||||||.|||  ||.|  |.||.||.|.||||||.||||||||..|||||||||||||||||
Sbjct 1184  GTAAGGTTTGTGACAAGGCTTT--CAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGA  1255

Query  239  AACTCATTATAAGTGTAATGAGTGTGGCAAGACCGTTGGTC---------------------------------  279
            ||  |.|||.||||||||||||||||||||||||.|||.||                                 
Sbjct 1256  AA--CCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTC  1327

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1328  ATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCAT  1401

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1402  CGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCT  1475

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1476  TGAACGTCATCATAGACTTCATACTGGAAAGAAATCTTAGAAGTGTAAATTTGCAAGGTTTTTAGGCAACAGTC  1549

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1550  AAACCTTGCATGTCATCATAGACTTTATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAAGTTTTC  1623

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1624  AATTTCAAATCACTCCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGA  1697

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1698  CAAGGATTTCGGGTGTGATTCACACCTGGCCCAACATACTGGAATTCACACTGGAAAGGAACTGTACAAGTGTA  1771

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1772  ATGAGTGTGGCAGAGCCTTTGGTGGTCAGTCAACACTTACTCACCATCAAGCAATCCATGGTATAGGGAAACTT  1845

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1846  GACTAATGTAATGATTGTCACAAAGTCTTCAGTAATATTACAGCCATTGCAAAACATTGGAGAATCCATAATGA  1919

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1920  AGGAGGTCTTACAAGTGTAATAAATGTGGCAAGTTTTTCAGACATCATTCATAACTTGCAGTTCATTGGCGATC  1993

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1994  TTATACAGGAGAGAAATCTTACAAATGTGATGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTTTTGCAAAAC  2067

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2068  GGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGAGCAAAGCCTTTACTTCACGTTCACACC  2141

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2142  ACATTAGATATCAGAGGATCCATACTGGACAGAAATCTTACAAACGTCCTATGTGTGGCAAGGTCTTCAGTCCG  2215

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2216  AGGTTACTCCTTGCAGAATATCATAACGTTCATTTTTGAGGTAATAGTTACAAATGCGGTGAGCACAGCAAACC  2289

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2290  ATCAAGGATTGACAGTAGAGTCAATTCAGAATTGACTTGAGTTTGAGTTGACTTAAAACATTCAGTTGAAGCAT  2363

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2364  TAATTGACATTAAAGTGTTTATGTTAAGAGGATTGGGCCAGGCGTGTGGCTCACGCCTGTAAATCCAGCACTTT  2437

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2438  AGGAGCCCAAGGTGGATAGATCACTTGAGGTCATGAGTTTGAGATCAGCCTGGCCAACAGACGATTGATTTCCA  2511

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2512  AAGACTCATGCTATGTAAGGAAGCCACCAAGAAGGGCAAAGAAAAGGAGCCAGGGACGGCTCTTCCTCAGGGAC  2585

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2586  ACTAGACTTTCAGGGATGTGGCTATAGATTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCT  2659

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2660  TTATACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGGGCTTGAGTGCAAGCCACGATCTCGC  2733

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2734  CTCACCACAACCTCCGTCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGT  2807

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2808  ATGAACCACTATGCCCGGCTAACTTTGTTTTTTTTTTTTAGAAATTAAACCTTTTTTCAGCTTAATGACCCAGG  2881

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2882  GGTGTATTTTTGAAGGACTTGGGAGCTCTCTTTGAAAGGCAAACAACAAGGGAAACAGTACCTTTATCTCAGTA  2955

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2956  GGAAATTAAATAATTCAAACATCAAATAACTTCAATTTAAGGCTATGGACTTTGAGATAATTCTGAGCCTTGAG  3029

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3030  AGGAATGTGGTCAGGCAACCTGAGTCCAGTGGAATGCAGGTGCAACTTCTAAGAGTTTTCCTGTAAGTAATTAA  3103

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3104  GAAGACTAAGTAGCCCCAGAGATAAGACCTCCTCGGATCATTGTCCCTTCTTATGTAGTGATAAAGTAACCTTC  3177

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3178  CTTGAAGTGTATCTATCCGTAATCAATCAAGTTGCTGCAGCCTATGCACTGGCCCAGAATAAAAAACGTGGTGA  3251

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3252  TTCTGCTAAAGCTTCTCTGTCTTTCCCTGTGTGTGAAATCTTAACGTCTCTACTTGGGAACGCTGATCCCATTC  3325

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3326  ATTTAGAGTTGATGTTTCCACGTGGCTATTTCCAAGCTTTGCCTTCAAATAAATTCTGTACTTAATCATATATT  3399

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3400  CTAAATTTTATTATTTACTGCTGACATCAGTTTCTGTCGGATTGTAGGAGCCTCACCAGAGAGGGCCCCTGTCG  3473

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3474  CCATGTTGTAAAACTCACACTTGCCAAAAGTTGTGGGTTAGGGTTTCTCCCCCTCCCTCAGGATGACGCTAGTT  3547

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3548  AGCTGACACAGATGGTCACCTCCATTACCAAGTAGAGTCAGGATGAACTATGTGTGACTGTTCAACTATGTGTC  3621

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3622  CTCTTCCCTGAGGACTGATTAGTGTTTATCTTGAAAACATGTCCTTAATGGGTTGTATAGAACACTGAAGCATC  3695

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3696  TGATTTCAAACTCTTAGCTCTTTTCCTCTATTTCCCATCACATTCTGGTCTAAGGCTTATTTATTAATAAAATG  3769

Query  280  ----------------  279
                            
Sbjct 3770  ATTTTTATTTCTTTAT  3785

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.