Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12944
Subject:
XR_001737527.1
Aligned Length:
4106
Identities:
753
Gaps:
3324

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGTGGAAGGAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGA  74

Query    1  ------ATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTG  68
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTG  148

Query   69  TTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCA  142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCA  222

Query  143  GTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAAC  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAAC  296

Query  217  TGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGA  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGA  370

Query  291  GCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAG  364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAG  444

Query  365  AAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCA  438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCA  518

Query  439  GTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCC  512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCC  592

Query  513  AGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTT  586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTT  666

Query  587  TGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT------------  648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct  667  TGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAA  740

Query  649  --------------------------------------------------ACAATGCAACTTTT-----TT---  664
                                                              |||.|.|||.||||     ||   
Sbjct  741  TATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTC  814

Query  665  ----------------TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCT  699
                            ||.||         |.|||||.|.||     ||||||     ||    ||.|.|||||
Sbjct  815  AGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCT  888

Query  700  GTC-GCCCAA---------------CTGGAGTGCA------GTGGCACAAT-------------------CATG  732
            ..| ||||||               |||...||||      ||.||| |||                   ||.|
Sbjct  889  TACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAG  961

Query  733  GC-------TCACTACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------  774
            ||       | |.|| |||   |.|||        .||||| |||       ||.|||..|.|.|.|       
Sbjct  962  GCGAGGTGAT-ATTA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAG  1032

Query  775  ATTTCGGCTTCC--------------------------------------------------------------  786
            ||..|.|||||.                                                              
Sbjct 1033  ATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATA  1106

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1107  AAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAA  1180

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1181  ACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTC  1254

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1255  ACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATA  1328

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1329  TTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAA  1402

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1403  CTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTC  1476

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1477  TTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTT  1550

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1551  TCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAG  1624

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1625  ATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAAT  1698

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1699  AATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTC  1772

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1773  TAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCAT  1846

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1847  TTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTT  1920

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1921  CCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCAT  1994

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1995  TCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAA  2068

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2069  TGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATA  2142

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2143  TAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGA  2216

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2217  CTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGT  2290

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2291  TTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCA  2364

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2365  AGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTA  2438

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2439  TTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCAC  2512

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2513  CTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTA  2586

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2587  AGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTG  2660

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2661  TCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCT  2734

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2735  AGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGT  2808

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2809  TTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAG  2882

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2883  CAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGT  2956

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2957  AGACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACA  3030

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3031  GTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAA  3104

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3105  AGCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTT  3178

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3179  GTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTT  3252

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3253  TTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCT  3326

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3327  CCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGC  3400

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3401  TAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGG  3474

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3475  GTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGA  3548

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3549  TTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGC  3622

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3623  CCTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAA  3696

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3697  AAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGG  3770

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3771  TCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGT  3844

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3845  GACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTAT  3918

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3919  CAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCAC  3992

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3993  TAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTAC  4066

Query  787  ------------------------------------  786
                                                
Sbjct 4067  CTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAA  4102

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