Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12974
- Subject:
- NR_027392.2
- Aligned Length:
- 2398
- Identities:
- 841
- Gaps:
- 1513
Alignment
Query 1 ATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGTTCAGCCACAGGAGGAAATTGCTAC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAGATCTGTGTAAAGCTACCTCCCCAG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTCAGG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAAAATTGCATCATTGTTGGGTTTATT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCAACATCCTGCAGAATGAAAAGTCTC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAGCTACCAGAGAATCAAGCTATCCAA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 ATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGGTGTAAGA--AATAAGTGCCTGCAG 516
||| ||..||.||
Sbjct 1 ------------------------------------------------------AGAAGAAGGAGGGC------ 14
Query 517 TTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCA 590
|| |||| ||.| || ||||||| .|||| ||||
Sbjct 15 ------GG------TGGC-----GGGG----GT---------GATGCAG-CGGCC--GCTG------------- 42
Query 591 GAAGATTATAGGGGATTACTT----CAGTGACCAAGACC--CACGTGTCAG-AACAG------CAGCTATAAAA 651
|||| | |||.|.||..|.|| |.||.|.|.| |.||| |||||..|.||
Sbjct 43 ---------AGGG-------TGGCGCAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCGGACAGCTCCAGAA 100
Query 652 GC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTC 723
|| ||| | |||.|||||| ||..| ||||| |.|
Sbjct 101 GCTCATCG--GCATCTCCAT----------TGGCA------------------------GCCTG-------CGC 131
Query 724 --TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGC--------TCT 787
.|||...|| |||||||||.|| |||||.| |.|.|||...||| ...
Sbjct 132 GGGCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GACCTCACCGAGCAGGAGATACGG 185
Query 788 ATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATT 861
|.|||| .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 186 ACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATT 258
Query 862 TGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGT 935
||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 259 TGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGT 332
Query 936 CAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATG 406
Query 1010 AGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAA 1083
|||||||||||||||||||||||||.||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 407 AGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAA 480
Query 1084 GAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGA 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGA 554
Query 1158 GATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGA 628
Query 1232 AGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATG 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 629 AGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATG 702
Query 1306 AGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 703 AGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCAGC 776
Query 1380 CAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTG 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTG 850
Query 1454 CATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAG------------ 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTT 924
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 925 CTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACAC 998
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 999 AGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTC 1072
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1073 CAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTT 1146
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1147 GTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGA 1220
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1221 TCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCC 1294
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1295 AGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAATGTAGCTGCCCCTTCGTATTTGAAGC 1368
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1369 AGAGTGATTTGGCCTCAGCAGCAGCAAAACAGACTTTACCCCTTATTTGGGATGTGTGAAAAATTTTTACAGGA 1442
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1443 AGTAGACTTTTTTCAGAGGTATTTCATCGCTGATTTGCCCCACTTGCAGGACAGCTTTGTGGACAAACTCCTTG 1516
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1517 ACCTTATGCCCCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGT 1590
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1591 GCCTTTCTGCATCTCCCACTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATTGAGCCAGCGGGCGAGTC 1664
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1665 AGACAACCCTTTGCAGTTTAACTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGG 1738
Query 1516 ------------------------------ 1515
Sbjct 1739 ATCCTCAGAACACTGTTAAGGTCCAGGTCT 1768
