Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12975
Subject:
NR_027392.2
Aligned Length:
1965
Identities:
1276
Gaps:
632

Alignment

Query    1  ATGCCATCAACATCCTGCAGAATGAAACATCTGACAGATACGTCTCATGGTGTAAGA--AATAAGTGCCTGCAG  72
                                                                  |||  ||..||.||      
Sbjct    1  ------------------------------------------------------AGAAGAAGGAGGGC------  14

Query   73  TTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCA  146
                  ||      ||||     ||.|    ||         ||||||| .||||  ||||             
Sbjct   15  ------GG------TGGC-----GGGG----GT---------GATGCAG-CGGCC--GCTG-------------  42

Query  147  GAAGATTATAGGGGATTACTT----CAGTGACCAAGACC--CACGTGTCAG-AACAG------CAGCTATAAAA  207
                     ||||       |    |||.|.||..|.||  |.||.|.|.| |.|||      |||||..|.||
Sbjct   43  ---------AGGG-------TGGCGCAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCGGACAGCTCCAGAA  100

Query  208  GC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTC  279
            || ||| |  |||.||||||          ||..|                        |||||       |.|
Sbjct  101  GCTCATCG--GCATCTCCAT----------TGGCA------------------------GCCTG-------CGC  131

Query  280  --TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGC--------TCT  343
              .|||...||      |||||||||.||      |||||.|        |.|.|||...|||        ...
Sbjct  132  GGGCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GACCTCACCGAGCAGGAGATACGG  185

Query  344  ATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATT  417
            |.|||| .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  186  ACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATT  258

Query  418  TGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGT  491
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct  259  TGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGT  332

Query  492  CAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATG  565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333  CAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATG  406

Query  566  AGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAA  639
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  407  AGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAA  480

Query  640  GAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGA  713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGA  554

Query  714  GATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGA  787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555  GATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGA  628

Query  788  AGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATG  861
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  629  AGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATG  702

Query  862  AGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATC  935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  703  AGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCAGC  776

Query  936  CAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTG  1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  777  CAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTG  850

Query 1010  CATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTT  1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  851  CATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTT  924

Query 1084  CTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACAC  1157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  925  CTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACAC  998

Query 1158  AGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTC  1231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  999  AGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTC  1072

Query 1232  CAACAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTT  1305
            |||||||||.||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1073  CAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTT  1146

Query 1306  GTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGA  1379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147  GTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGA  1220

Query 1380  TCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCC  1453
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221  TCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCC  1294

Query 1454  AGGAGCTGCTGGAATTCACCATCAG-------------AGTCGAGGTTTCACCATG--GTGGCC----------  1502
            |||||||||||||||||||||||||             |||||.||      .|||  |..|||          
Sbjct 1295  AGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGG------AATGTAGCTGCCCCTTCGTATT  1362

Query 1503  --AGGC---------TGGTCTCA--AACTCCTGAGCTCAAG---------------------------------  1530
              |.||         |||.||||  |.|     |||..||.                                 
Sbjct 1363  TGAAGCAGAGTGATTTGGCCTCAGCAGC-----AGCAAAACAGACTTTACCCCTTATTTGGGATGTGTGAAAAA  1431

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1432  TTTTTACAGGAAGTAGACTTTTTTCAGAGGTATTTCATCGCTGATTTGCCCCACTTGCAGGACAGCTTTGTGGA  1505

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1506  CAAACTCCTTGACCTTATGCCCCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGC  1579

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1580  TGCGACAGAGTGCCTTTCTGCATCTCCCACTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATTGAGCCA  1653

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1654  GCGGGCGAGTCAGACAACCCTTTGCAGTTTAACTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGA  1727

Query 1531  -----------------------------------------  1530
                                                     
Sbjct 1728  GCATGTGCAGGATCCTCAGAACACTGTTAAGGTCCAGGTCT  1768

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