Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12975
Subject:
NR_146906.1
Aligned Length:
3915
Identities:
1387
Gaps:
2457

Alignment

Query    1  -----------------------ATGCCA--TCAA----CATCCTGCAGAATGAAA---CA--TCTGA------  34
                                   .|||||  ||.|    |.|||||      |.||   ||  .|.||      
Sbjct    1  GAGGGCGGGAGCGGCAGACTCCGCTGCCAGCTCTACTGGCGTCCTG------GCAAGGGCAGCGCCGAGGGGCG  68

Query   35  ---------CAGAT---ACGTCTCATGG------TG--TA------AGAAATAAG--------TGCCTGCAGTT  74
                     |||.|   .||.|||..||      ||  ||      ||     ||        |.|||||    
Sbjct   69  CTCCCGGTCCAGCTCTCCCGGCTCGGGGGTTCCTTGCCTAGGCGCCAG-----AGCCCCGGGCTCCCTGC----  133

Query   75  ACTTGGCAATCTTGGCTCTTTGG-------AGAAAAGTGTCACAAAAGATGC---AGAAGGCCTAGCTGCCAGA  138
             ||.|||        |.||.|||       ||   ||.|.|||      |||   .|.||||   |.||..|||
Sbjct  134  -CTCGGC--------CGCTGTGGCCTGCATAG---AGCGGCAC------TGCGCGCGGAGGC---GATGGGAGA  186

Query  139  GATGTCCAGAAGATTATAGGG-------------GATTACTTCAGTGAC--------------CAAGACCCACG  185
            ||     |||||    .||||             ||    |.|||.|.|              ||.|..||.||
Sbjct  187  GA-----AGAAG----GAGGGCGGTGGCGGGGGTGA----TGCAGCGGCCGCTGAGGGTGGCGCAGGGGCCCCG  247

Query  186  TGTCAG-----------AACAG------CAGCTATAAAAGC-CAT-GTTGCAGCTCCAT--GAA-----AGAGG  233
             |.|||           |.|||      |||||..|.|||| ||| |  |||.||||||  |.|     .|.||
Sbjct  248  -GCCAGCCCGGGGCTGCAGCAGTGCAGACAGCTCCAGAAGCTCATCG--GCATCTCCATTGGCAGCCTGCGCGG  318

Query  234  ACTG------AAAT------------------TACACCAAACAATTTATA---ATC----AGGCCTGTAAATTA  276
            .|||      ||.|                  | ||||.|.||....|||   |.|    ||||||||||||||
Sbjct  319  GCTGGGCACCAAGTGCGCTGTGTCCAACGACCT-CACCGAGCAGGAGATACGGACCCTGGAGGCCTGTAAATTA  391

Query  277  CTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGA  350
            |||||||||||||||||||||||||||||||||||||||.|||||||||||||.||||||||||||||||||||
Sbjct  392  CTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCTAGCTTATCTGGGTTGTCAGTCAGCTCTATCCTGA  465

Query  351  AAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACA  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  466  AAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATTTGTCACA  539

Query  425  TGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCT  498
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  540  TGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCT  613

Query  499  CATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGC  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  614  CATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGC  687

Query  573  CAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAG  646
            ||||||||||||||||||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  688  CAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAGAAGTAG  761

Query  647  ATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTAT  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  762  ATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTAT  835

Query  721  GAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCT  794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  836  GAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCT  909

Query  795  TGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAA  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  910  TGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATGAGAAAAA  983

Query  869  TCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGAT  942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  984  TCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGAT  1057

Query  943  ATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGT  1016
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058  ATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGT  1131

Query 1017  GGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAA  1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132  GGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAA  1205

Query 1091  GTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAA  1164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206  GTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAA  1279

Query 1165  CCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAAT  1238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280  CCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAAT  1353

Query 1239  GCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTG  1312
            ||.||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354  GCGAGCATTGTTC-------------TCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTG  1414

Query 1313  CCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCCTTCC  1386
            ||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1415  CCTTGAGGTTGCCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCCTTCG  1488

Query 1387  CAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCT  1460
            ||||||.||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1489  CAGCAGCTCCTGCAGCAGAGCCTTGAAGGAGTGTGTAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCT  1562

Query 1461  GCTGGAATTCACCATCAG-------------AGTCGAGGTTTCACCATG--GTGGCC------------AGGC-  1506
            ||||||||||||||||||             |||||.||      .|||  |..|||            |.|| 
Sbjct 1563  GCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGG------AATGTAGCTGCCCCTTCGTATTTGAAGCA  1630

Query 1507  --------TGGTCTC----------AAAC----TCCT--------GAGCTCAAG--------------------  1530
                    |||.|||          ||||    .|||        ||..|||.|                    
Sbjct 1631  GAGTGATTTGGCCTCAGCAGCAGCGAAACAGAGACCTACAAAATGGAATTCATGTAGAGTGGTGTGGAGAATAA  1704

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1705  GCAGGTGGTGATTATACATCACATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAATAACAGCACGAACTACAC  1778

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1779  GAGGACTTTACCCCTTATTTGGGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGTATTTCATC  1852

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1853  GCTGATTTGCCCCACTTGCAGGACAGCTTTGTGGACAAACTCCTTGACCTTATGCCCCGATTCATGACATCCAA  1926

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 1927  ACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGCATCTCCCACTTCCAGAGC  2000

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2001  AGATCCACAAAGCCTCAGCCACCATCATTGAGCCAGCAGGCGAGTCAGACAACCCTTTGCGGTTTACCTCTGGG  2074

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2075  TTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAACACTGTTAAGGTCCAGGT  2148

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2149  CCCAGAGAGCTACTCACTGCATGTGTCTTTGACCTGCTGTTGATTCATCTCCTCTGCTAAGAAGGTGGCTGATG  2222

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2223  GCTGGGCTATTTACACCTAGGAGGGTGTTCCAGGCCAGGCCCCAGGGAGCCTAAAATAATCAAAAAGGACACAT  2296

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2297  GAACCATTAACAAGAAAAATATTTAAATAAGAAACTCACCAAGCCAGGAGAATAATGAATACCTGGATGTGCCC  2370

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2371  CCTAGGAATCTGGATCTCTTCTCTTTTCCCCACCCTGCCCTCAACTCCCCTTACATACATACAGCCTGGATCAC  2444

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2445  AAGACCCAAGAAAACCATTCCACCAGCTGCTGAGAGAAGAGCCACAAAAGGACCCAGAACTTCTCCATGGCTAC  2518

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2519  CTTAGAGCACCCTAAAATGTGCTAACAGCCATTGTTAGCATTCAGGAGCTGTTTATTCCCATTTTCACACTACA  2592

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2593  CTAAAGAATTTTAAACAATCACAAGATAGACTGGCTGGAAGTTGGTGCTTGGAACATCCCACGTCACCTAAAAG  2666

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2667  CACAGTGCTGCAATCTCAGAAACCCCAGGCTCAGCCAGCAGAGAGAGGAGAAGCAGCTGGACATTGGAGACTAT  2740

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2741  GATTGGACATTAGAGAGAAGGAGCTTGACTTCACAGAGAAAGCATGATGGAATAATTTCAGAGAAAAGTCTGGC  2814

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2815  CAGGGATGACCAGACTTCAGGGGAAGATAATCTTGCTCAATATCCTTTTCTGCTCCCCTTCCTGCTGAGAGTCA  2888

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2889  CTTTGATTGGCAATAAAATATCTCACATTTACCATCTTCAATTTGTTCTTGCAACCTCATTCCTCCTGGATGCC  2962

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 2963  AGACAAGAACTCAGGTGCCATGAGTATGGGTGCAAAAGGCTATCACACTGTCCCTCCACTGAGCTGTTAACACT  3036

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3037  TAAGCTATCCATGGACAGCAAAGCTAAAAGGGCACTGTAAGAGTCCTTCTGGGGTTTCAGAAGTCATGAGCATC  3110

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3111  CCCCAGATGCTGCCATGGGGCCAGTACAGAGTTTGCTCCTGCCAGAGTCCAAAAATGTCTCAGCTCCTGCACCC  3184

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3185  AGTCACCTGCATGCTCCCCCTCCCACAAGTGGTGGAGCACAGTGGGCTGAGTGAGTGGAGTTTGCCCCTGCCAG  3258

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3259  CACCCGTGCACTCCAGTTCCCACCTGTGAAGGTGTCAGAGAGATATTCTGCTTAAAAATCAGAGTGACTCCATC  3332

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3333  TTAAATAGCAGCTGGGTGAGATAAGGCTGAGACCTACTGGGCTGCATTCCCAGGAGGTTAGGCATTCTAACCTT  3406

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3407  CTATCAGGATGAGATAGAAGGCCAGCATAAGATATAGGTCACGAAGACTCTGCTGATAAAACAGGATGTGGTTT  3480

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3481  AAATAAATGCCAGCCAGAACCCACCAAAACCAAGATGGTGATGCTCATTCTCACTGCTCATTATATGCCAGTAT  3554

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3555  AATGCATTTGCATGCAAAAAGACTCTACCACCAGTGCCATGACAGCTTACAGATGCCATGGCAAGATCTGGAAG  3628

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3629  TTACCCTGTAGCCTCTAAAATGGGGAAGAACCCTCAGTTCTGGAAAATTTCTGCCCCTTTCCTGAAAAACTCAT  3702

Query 1531  --------------------------------------------------------------------------  1530
                                                                                      
Sbjct 3703  GAATAATCTACCCTTTGTTTAGCATATAATCAAGAAACAACTATAAGTATAGTCAATCGAGCAGCCAATCTCAC  3776

Query 1531  -------------------------------------------------------------------  1530
                                                                               
Sbjct 3777  CGCTCTGTCTATGGAGTAGTCATTCTTTTATTTACATCTCTAATAAAATTGCTTTCACTTTACTGTA  3843

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