Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12984
Subject:
NM_029967.3
Aligned Length:
5285
Identities:
1199
Gaps:
3910

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAATGCTGCCGTCGGGCAGCTCCTGGCACACCGCTGCTCGTTCTGGCTTTCCTACTCCTGAGTTCCAGGAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCACGCTCAGAGGAAGACCGTGAAGGCCTCTGGGATGCCTGGGGCCCTTGGAGCGAGTGTTCCAGAACCTGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGGGGGTGCCTCCTATTCCCTGAGACGCTGCCTGAGCAGCAAGAGCTGTGAAGGGAGAAATATTCGATATAGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATGCAGTAATGTGGACTGCCCACCAGAAGCAGGTGATTTCCGAGCTCAACAGTGTTCTGCTCATAACGACGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAAGTACCATGGACAGCTTTATGAATGGCTTCCTGTATCTAATGACCCCGACAATCCATGCTCACTCAAGTGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAGCAAAAGGAACCAGCCTGGTTGTGGAACTAGCACCGAAGGTCTTAGATGGTACGCGATGCTATACAGAATCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTGGATATGTGCATCAGCGGCCTATGCCAAATTGTTGGCTGTGATCACCAGCTGGGGAGCACTGTCAAAGAGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TAACTGTGGAGTGTGCAACGGAGATGGCTCAACGTGCCGGCTGGTCCGAGGGCAGTATAAATCTCAGCTCTCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAAGTAAATCGGATGACACCGTGGTCGCCATTCCTTACGGCAGCAGACACATCCGCCTTGTCTTAAAAGGGCCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GATCATTTGTATCTGGAGACCAAGACCCTCCAGGGAACTAAAGGTGAAAATAGTCTGAGCTCTACAGGCATTTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCTTGTGGACAATTCTACAGTGGACTTCCAGAAACTTCCAGACAAAGAGATACTGAGGATGACTGGGCCACTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAGCAGATTTCATCATCAAGATCCATGACTTGGGACCTGCAGACAGCACCGTCCAGTTCATCTTCTACCAGCCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATCATCCACCGATGGAGGGAAACAGACTTCTTTCCTTGCTCAGCAACGTGTGGTGGAGGCTACCAGCTGACGTC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGCCGAGTGCTATGATCTACGGAGTAACCGTGTGGTGGCCGACCAGTACTGTCACTACTACCCCGAGAACGTCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGCCCAAACCCAAGCTTCAGGAGTGCAACTTGGATCCTTGTCCAGCCAGGTGGGAGGCCACCCCGTGGACCGCG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TGCTCCTCCTCATGTGGGGGGGGCATCCAGAGCCGGGCAGTTTCCTGTGTGGAGGAGGACATCCAGGGGCATGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CACTTCAGTGGAAGAGTGGAAATGCATGTACACCCCAAAGATGCCAGTCGTGCAGCCCTGCAACATTTTTGACT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCCCTAAATGGCTGGCACAGGAGTGGTCTCCGTGCACAGTGACCTGTGGCCAGGGCCTCAGATACCGCGTGGTA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTCTGCATTGACCACCGAGGAATGCACACAGGAGGCTGCAGTGCTAAAACAAAGCCCCACATAAAAGAAGAATG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CATCATTCCCACACCGTGCTACAAGCCCAGAGAGAAACTTCCAATAGAGGCCAAGCTGCCATGGTTCAAGCAAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCCAGGAGCTAGAGGAAGGAGCTGCAGTGTCTGAAGAGCCTTCGTTCATCCCAGAAGCTTGGTCGGCCTGTACT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTCACCTGTGGCGTGGGGACACAGGTGCGAATAATAAGATGCCAGGTGCTCCTGCCTTTCTCTCAGTCTGTGGC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGACCTGCCTGCGGATGAATGCGAAGGGCCTAAGCCAGCATCGCAACGTGCCTGTTATGCGGGACCGTGCAACG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GGGAAACTCCGGAATTTAACCCGGATAACGGAGACGGACTCTTGGGTGGCCTGCAGGACCTGGACGAGCTGTAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GACTGGGAATATGAGGGCTTCACCAAGTGCTCTGAGTCATGTGGAGGAGGTGTCCAGGAGGCTGTGGTAAGCTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCTGAACAAACAGACCCGGGAACTCGCTGATGAGAACCTGTGTGTGACCAGCCGACGGCCCCCGCAGCTCCTGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AATCCTGTAACTTGGATCCCTGCCCAGCAAGGTGGGAAATTGGCAAGTGGAGCCCATGTAGCCTCACCTGTGGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GTTGGCCTGCAGACCAGAGATGTTGTCTGTTCCCACCTACTCTCCAGAGAGATGAACGAGGTGGTTGTCCTGGC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CGATGAGCTGTGCCATCACCCCAAACCCAGCACAGTGCAAGCCTGCAACCGTTTCAATTGCCCCCCAGCCTGGT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACCCTGCACAGTGGCAGCTGTGTTCCAGGACCTGTGGAGGAGGGATTCAGAAACGTGATGTTCTCTGCAAGCAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CGTATGGCTGACGGCAGCTTCCTGGAGCTTCCAGAGACCTTCTGTTCTGCCTCCAAACCAACCTCCCACCAAGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTGCAAGAAAGATGACTGCCCCAGTGAGTGGCTTCTCTCAGAGTGGTCAGAGTGCTCTGTGAGCTGTGGGGAGG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GCACCCAGACTCGAAGTGCCATTTGCCAGAGGGTGCTGAAAACTGGGGTCTCCACTGTTGTCAATTCTACTTTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGCCCTCCCCTGCCCTTCTCTTCCTCCATCAGACCCTGTATGCTGGCAACCTGTGCAAGGCCTGGAAGGCCTTC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CACCAAGCACAGTCCTCACATCGCAGCTGCACGAAACATATACATCCAGACCCGCAGGCAGAGGAAGCTGCACT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCGTTGTGGGAGGATTTGCTTACCTGCTTCCCAAGACTACCGTGGTGCTCCGGTGTCCCACACGCAGATTCCGC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAGCCCCTCATCACGTGGGAAAAGGACGGCCAGCACAGCATCAGCTCGGCTCATGTCACCGTAGCCCCTTTTGG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTACCTGAAGATCCATCGCCTCAAGCCCTCAGATGCGGGCATCTACACCTGTTCTGCGGGGCCCGCCCGGGAGC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AGTTTGTGATTAAGCTCATTGGAGGCAACCGCAAGCTCGTGGCCAGGCCCCTGAGCCTTTGGAGTGAGGAAGAG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GAGGCCCTGCAGGTGAGGAAGACCAATCCAAAAGAAGCCTTGCAAACCCACAAACACCAAAATGGCATCTTCTC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CAACGGCAGCAAAGCTGAGAAGCGCGGCCTCACTGCAGATCCTGGGAACCGCTATGATGACATTGTGTCTAGGC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TGTTGGAGCAGGGCGGCTGGCCAGGAGAGCTCCTGGCCTCGTGGGAGGTGCAGGACTCTGCAGAAAGGAACGCA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCCTCAGAAGAGGATCCCAATGCTGAACAGGCCCTCCTGCATCTCCCCTTCACCATGGTGGCCGAGCAGAAGCG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TCTGGATGACATCCTCAGGAACCTGTCCCAGCAGCCAGAGGAGCTACGGGACCTCTACAGCAAGCACCTGGTGG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CCCAGCTGGCCCAGGACATCTTCCGAAGCCACCTGGAGAACCAGGATCTGCTTCCTAAGCCCTCTGAGCAGAGG  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TTTCCTCCCATGGCCGTCCCAGCTCACAAACATGTCTCTGGCTTCAGCAGCTCCCTAAGGAGCTCATCTGGAGA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GGCTGGAGGTGGCTCCCGTAGGCCTCATCGCAAGCCCGCCATCTTGCGGAAGATCTCAGCGGCACAGCAACTCT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CAGCCTCGGAGGTAGTCACCCACCTGGGGCAGACTGTGGCTCTAGCCAGTGGGACCCTGAGTGTGCTTCTGCAC  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  TGTGAGGCGGTAGGCAACCCAAGGCCCACCATCCACTGGACCAGGAACGGAGAAGCAGTTCAATTCAGTGACAG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  GATTCTTCTACAGCCAGATGATTCCTTACAGATCTTGGCACCAGTGGAAGCTGATGTGGGTTTCTATACTTGCA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  ATGCCACAAATGCCTTGGGATATGACTCTGTCTCCATTGCTGTCACATTAGCAGGAAAGCCACTAGTGAAGACA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TCCCGAATGACTGTGCTCAACACAGAGAAGCCTACAGTCACAGTGGATATCGGTGGCACCGTCAGAACCGTCCG  3848

Query    1  --------ATGTG---TTTGACTGATGAGTGGGGTTTTTTGTTTTTTTTTTTCTTCCTAGGAGTGCCTGAAGCT  63
                    |||||   .||.||||...|||||                         .|||.||.|||||||||
Sbjct 3849  AGGAGTGAATGTGACAATTAACTGCCAAGTGG-------------------------CAGGTGTACCTGAAGCT  3897

Query   64  GAAGTCACTTGGTTCAGGAATAAAAGCAAACTGGGCTCC-------------------------CCGCACCATC  112
            ||||||||.||||||||.||||||||||||.||||||||                         || |||||.|
Sbjct 3898  GAAGTCACCTGGTTCAGAAATAAAAGCAAATTGGGCTCCTCCCACCACCTGCATGAGGGCTCCTCC-CACCACC  3970

Query  113  TGCACGAAGGCTCCTTGCTGCTCACAAACGTGTCCTCCTCGGATCAGGGCCTGTACTCCTGCAGGGCGGCCAAT  186
            ||||.||.||||||||||||||||||.|.|||||||.|||.|||||.||||||||.|||||||||||.||||||
Sbjct 3971  TGCATGAGGGCTCCTTGCTGCTCACAGATGTGTCCTTCTCTGATCAAGGCCTGTATTCCTGCAGGGCAGCCAAT  4044

Query  187  CTTCATGGAGAGCTGACTGAGAGCACCCAGCTGCTGATCCTAGATCCCCCCCAAGTCCCCACACAGTTGGAAGA  260
            ||.||.|||||.|.|||.||||||||.|||||.|||||.|||||||||||.|||||||||||||||||||||||
Sbjct 4045  CTACACGGAGAACAGACAGAGAGCACGCAGCTCCTGATTCTAGATCCCCCGCAAGTCCCCACACAGTTGGAAGA  4118

Query  261  CATCAGGGCCTTGCTCGCTGCCACTGGACCGAACCTTCCTTCAGTGCTGACGTCTCCTCTGGGAACACAGCTGG  334
            ||||||||||||||||...|||||||||||||||||||||||.|||||.|.|||.|||||||||||||||||||
Sbjct 4119  CATCAGGGCCTTGCTCTTAGCCACTGGACCGAACCTTCCTTCGGTGCTTATGTCCCCTCTGGGAACACAGCTGG  4192

Query  335  TCCTGGATCCTGGGAATTCTGCTCTCCTTGGCTGCCCCATCAAAGGTCACCCTGTCCCTAATATCACCTGGTTT  408
            |||||||||||||||||||.||||||||||||||||||||||||||||||||...|||.||||||||||||||.
Sbjct 4193  TCCTGGATCCTGGGAATTCCGCTCTCCTTGGCTGCCCCATCAAAGGTCACCCCACCCCCAATATCACCTGGTTC  4266

Query  409  CATGGTGGTCAGCCAATTGTCACTGCCACAGGACTGACGCATCACATCTTGGCAGCTGGACAGATCCTTCAAGT  482
            ||...|||.||||||||||.|||||||.|.||.|||||.||.|||||||.||.|||||||||||||||.|.|||
Sbjct 4267  CAAAATGGCCAGCCAATTGCCACTGCCCCGGGGCTGACCCACCACATCTGGGGAGCTGGACAGATCCTACGAGT  4340

Query  483  TGCAAACCTTAGCGGTGGGTCTCAAGGGGAATTCAGCTGCCTTGCCCAGAATGAGGCAGGGGTGCTCATGCAGA  556
            ||||||.||.||.||.||..||||||||||.|||||||||||.||.||||||||.||||||...|||.||||||
Sbjct 4341  TGCAAATCTCAGTGGAGGACCTCAAGGGGAGTTCAGCTGCCTGGCTCAGAATGAAGCAGGGACCCTCCTGCAGA  4414

Query  557  AGGCATCTTTAGTGATCCAAGATTACTGGTGGTCTGTGGACAGACTGGCAACCTGCTCAGCCTCCTGTGGTAAC  630
            |.||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||.||.||.||||||||.
Sbjct 4415  AAGCCTCTTTGGTGATCCAAGATTACTGGTGGTCTGTGGATAGACTGGCAACCTGCTCCGCATCTTGTGGTAAT  4488

Query  631  CGGGGGGTTCAGCAGCCCCGCTTGAGGTGCCTGCTGAACAGCACGGAGGTCAACCCTGCCCACTGCGCAGGGAA  704
            .|.||..||||.|||||.||..|.|||||..|.|||||||.||||||.||..||||||..|||||..||||.||
Sbjct 4489  AGAGGCATTCATCAGCCGCGACTCAGGTGTTTACTGAACACCACGGAAGTTGACCCTGAGCACTGTACAGGAAA  4562

Query  705  GGTTCGCCCTGCGGTGCAGCCCATCGCGTGCAACCGGAGAGACTGCCCTTCTCGGTGGATGGTGACCTCCTGGT  778
            |..|||.||.||.||||||||..|.||.|||||||||||||||||.||||||||.|||||||||||.|||||||
Sbjct 4563  GCCTCGGCCCGCCGTGCAGCCTGTTGCCTGCAACCGGAGAGACTGTCCTTCTCGATGGATGGTGACGTCCTGGT  4636

Query  779  CTGCCTGTACCCGGAGCTGTGGGGGAGGTGTCCAGACCCGCAGGGTGACCTGTCAAAAGCTGAAAGCCTCTGGG  852
            |.||||||||||||||.||.||.||||||||.||.|||||.||||||||||||||.|||.|||||||.|||||.
Sbjct 4637  CCGCCTGTACCCGGAGTTGCGGTGGAGGTGTACAAACCCGAAGGGTGACCTGTCAGAAGTTGAAAGCTTCTGGT  4710

Query  853  ATCTCCACCCCTGTGTCCAATGACATGTGCACCCAGGTCGCCAAGCGGCCTGTGGACACCCAGGCCTGTAACCA  926
            ||.||.|||||.|||||||||||||||||||..||..|.|||||.|||||||||||||||||||||||.|||||
Sbjct 4711  ATTTCTACCCCGGTGTCCAATGACATGTGCAGTCAACTGGCCAAACGGCCTGTGGACACCCAGGCCTGCAACCA  4784

Query  927  GCAGCTGTGTGTGGAGTGGGCCTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATCGGGCCTCACCTAGCTG  1000
            ||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||.||.||||.|||.||||
Sbjct 4785  GCAGCTCTGTGTGGAATGGGCCTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATAGGCCCTCGCCTTGCTG  4858

Query 1001  TGCAACACAGACAAGTCTTCTGCCAGACACGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGCTCTTCCG  1074
            ||||.|||||.||.||||||||||||||.||||||||||||||||||||||||||||||||||||||.||.||.
Sbjct 4859  TGCAGCACAGGCAGGTCTTCTGCCAGACCCGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGCCCTCCCC  4932

Query 1075  AGGCCTGTGAGCACCCAGAACTGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTGTGGACCCTGTG  1148
            |||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 4933  AGGCCCGTGAGCACCCAAAACTGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTCTGGACCCTATG  5006

Query 1149  CACAGCTACCTGTGGCAACTACGGCTTCCAGTCCCGGCGTGTGGAGTGTGTGCATGCCCGCACCAACAAGGCAG  1222
            |||.||.||||||||||||||.|||||||||||||||||.|||||||||||.||.|..||||||||||||||.|
Sbjct 5007  CACGGCAACCTGTGGCAACTATGGCTTCCAGTCCCGGCGGGTGGAGTGTGTTCACGTGCGCACCAACAAGGCTG  5080

Query 1223  TGCCTGAGCACCTGTGCTCCTGGGGGCCCCGGCCTGCCAACTGGCAGCGCTGCAACATCACCCCATGTGAAAAC  1296
            ||||.|||||||||||.|||||||||||||||||.|||||||||||.|||||||||.||||.||||||||||||
Sbjct 5081  TGCCCGAGCACCTGTGTTCCTGGGGGCCCCGGCCCGCCAACTGGCAACGCTGCAACGTCACTCCATGTGAAAAC  5154

Query 1297  ATGGAGTGCAGAGACACCACCAGGTACTGCGAGAAGGTGAAACAGCTGAAACTCTGCCAACTCAGCCAGTTTAA  1370
            |..|||||||||||||||||||||||||||||||||||||.||||.|||||||||||||.|||.|||||||...
Sbjct 5155  ACTGAGTGCAGAGACACCACCAGGTACTGCGAGAAGGTGAGACAGTTGAAACTCTGCCAGCTCGGCCAGTTCCG  5228

Query 1371  ATCTCGCTGCTGTGGAACTTGTGGCAAAGCG  1401
            ||||||||||||||||||.|||||||||||.
Sbjct 5229  ATCTCGCTGCTGTGGAACGTGTGGCAAAGCA  5259

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