Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12984
- Subject:
- XM_006538376.1
- Aligned Length:
- 6017
- Identities:
- 1153
- Gaps:
- 4684
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCTTGCTAGGGTCCGGCTCTGGGCACCGAAGGACCTTTCCCTCTCAGGATGGCCAGGGTGGCATTCCAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGGAGCAAAGCGAACAGCTGTGACCTTCCTTTAAAAATGAAGAAAGAGGCAGAAAGCAGCCCTGCTCGTTTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTATCCCCACCCCCACCCCCGGACACATCGTGCTGCCTGGACGGCGCTTGGCTGACCCTAGAGGGAGGAGCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGGTGCTGGGGCGGGGTCGCCCAGCCACCGGGCGGGGACTGCCCCACTCACGCGGAACGCCCCCAGCCAGGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACGCGCTCCCATTCAAAGCAGCAGGGCTGCAAGGCCGCTGCAGTGACGCGCCCACCCGGCCCTGTGCTGCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCCAGCCTGGGGTCCGCAGTTATCGCTCCACAACTCCTCCAGGACCATGGCAAGGCTGGTGACGCGTAACCGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGGGTTCCTGGCTCGCCTCATCGGTGGCATCTGGTGCCTCCTCTGTGTCGCAGGACAGAGCTGCTCTGCTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCAGAGGGATGTTCACTTGGCATTTCTGGCCTGCTGGCTGTCCTTCCCACACCCACCCACCACCACTGACCGAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAAGCAGAGTGGAAAATCAAAATCCAACCCTCAAAGAAGTATGTGGAGACCAAAGCCAAGGGGCTGTTTTCCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGGAATTTACACTGATTCGAAGAGAGAGCCTTCATGAAGAGTTCCTGTCTGACTTCTTGAATAGTCACAAAAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGAAGACCCGAGTTCCAGGACTGCACGCTCAGAGGAAGACCGTGAAGGCCTCTGGGATGCCTGGGGCCCTTGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCGAGTGTTCCAGAACCTGTGGTGGGGGTGCCTCCTATTCCCTGAGACGCTGCCTGAGCAGCAAGAGCTGTGAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGGAGAAATATTCGATATAGAACATGCAGTAATGTGGACTGCCCACCAGAAGCAGGTGATTTCCGAGCTCAACA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTGTTCTGCTCATAACGACGTCAAGTACCATGGACAGCTTTATGAATGGCTTCCTGTATCTAATGACCCCGACA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCCATGCTCACTCAAGTGCCAAGCAAAAGGAACCAGCCTGGTTGTGGAACTAGCACCGAAGGTCTTAGATGGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACGCGATGCTATACAGAATCACTGGATATGTGCATCAGCGGCCTATGCCAAATTGTTGGCTGTGATCACCAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGGGAGCACTGTCAAAGAGGATAACTGTGGAGTGTGCAACGGAGATGGCTCAACGTGCCGGCTGGTCCGAGGGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGTATAAATCTCAGCTCTCTGCAAGTAAATCGGATGACACCGTGGTCGCCATTCCTTACGGCAGCAGACACATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CGCCTTGTCTTAAAAGGGCCAGATCATTTGTATCTGGAGACCAAGACCCTCCAGGGAACTAAAGGTGAAAATAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTGAGCTCTACAGGCATTTTCCTTGTGGACAATTCTACAGTGGACTTCCAGAAACTTCCAGACAAAGAGATAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGAGGATGACTGGGCCACTGACAGCAGATTTCATCATCAAGATCCATGACTTGGGACCTGCAGACAGCACCGTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAGTTCATCTTCTACCAGCCCATCATCCACCGATGGAGGGAAACAGACTTCTTTCCTTGCTCAGCAACGTGTGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGAGGCTACCAGCTGACGTCTGCCGAGTGCTATGATCTACGGAGTAACCGTGTGGTGGCCGACCAGTACTGTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACTACTACCCCGAGAACGTCAAGCCCAAACCCAAGCTTCAGGAGTGCAACTTGGATCCTTGTCCAGCCAGGTGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAGGCCACCCCGTGGACCGCGTGCTCCTCCTCATGTGGGGGGGGCATCCAGAGCCGGGCAGTTTCCTGTGTGGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGAGGACATCCAGGGGCATGTCACTTCAGTGGAAGAGTGGAAATGCATGTACACCCCAAAGATGCCAGTCGTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGCCCTGCAACATTTTTGACTGCCCTAAATGGCTGGCACAGGAGTGGTCTCCGTGCACAGTGACCTGTGGCCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGCCTCAGATACCGCGTGGTACTCTGCATTGACCACCGAGGAATGCACACAGGAGGCTGCAGTGCTAAAACAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCCCCACATAAAAGAAGAATGCATCATTCCCACACCGTGCTACAAGCCCAGAGAGAAACTTCCAATAGAGGCCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGCTGCCATGGTTCAAGCAAGCCCAGGAGCTAGAGGAAGGAGCTGCAGTGTCTGAAGAGCCTTCGTTCATCCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAAGCTTGGTCGGCCTGTACTGTCACCTGTGGCGTGGGGACACAGGTGCGAATAATAAGATGCCAGGTGCTCCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCCTTTCTCTCAGTCTGTGGCTGACCTGCCTGCGGATGAATGCGAAGGGCCTAAGCCAGCATCGCAACGTGCCT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTTATGCGGGACCGTGCAACGGGGAAACTCCGGAATTTAACCCGGATAACGGAGACGGACTCTTGGGTGGCCTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAGGACCTGGACGAGCTGTATGACTGGGAATATGAGGGCTTCACCAAGTGCTCTGAGTCATGTGGAGGAGGTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCAGGAGGCTGTGGTAAGCTGCCTGAACAAACAGACCCGGGAACTCGCTGATGAGAACCTGTGTGTGACCAGCC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GACGGCCCCCGCAGCTCCTGAAATCCTGTAACTTGGATCCCTGCCCAGCAAGGTGGGAAATTGGCAAGTGGAGC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CCATGTAGCCTCACCTGTGGGGTTGGCCTGCAGACCAGAGATGTTGTCTGTTCCCACCTACTCTCCAGAGAGAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GAACGAGGTGGTTGTCCTGGCCGATGAGCTGTGCCATCACCCCAAACCCAGCACAGTGCAAGCCTGCAACCGTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TCAATTGCCCCCCAGCCTGGTACCCTGCACAGTGGCAGCTGTGTTCCAGGACCTGTGGAGGAGGGATTCAGAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CGTGATGTTCTCTGCAAGCAGCGTATGGCTGACGGCAGCTTCCTGGAGCTTCCAGAGACCTTCTGTTCTGCCTC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CAAACCAACCTCCCACCAAGGGTGCAAGAAAGATGACTGCCCCAGTGAGTGGCTTCTCTCAGAGTGGTCAGAGT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCTCTGTGAGCTGTGGGGAGGGCACCCAGACTCGAAGTGCCATTTGCCAGAGGGTGCTGAAAACTGGGGTCTCC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACTGTTGTCAATTCTACTTTGTGCCCTCCCCTGCCCTTCTCTTCCTCCATCAGACCCTGTATGCTGGCAACCTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGCAAGGCCTGGAAGGCCTTCCACCAAGCACAGTCCTCACATCGCAGCTGCACGAAACATATACATCCAGACCC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCAGGCAGAGGAAGCTGCACTTCGTTGTGGGAGGATTTGCTTACCTGCTTCCCAAGACTACCGTGGTGCTCCGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TGTCCCACACGCAGATTCCGCAAGCCCCTCATCACGTGGGAAAAGGACGGCCAGCACAGCATCAGCTCGGCTCA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TGTCACCGTAGCCCCTTTTGGCTACCTGAAGATCCATCGCCTCAAGCCCTCAGATGCGGGCATCTACACCTGTT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTGCGGGGCCCGCCCGGGAGCAGTTTGTGATTAAGCTCATTGGAGGCAACCGCAAGCTCGTGGCCAGGCCCCTG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AGCCTTTGGAGTGAGGAAGAGGAGGCCCTGCAGGTGAGGAAGACCAATCCAAAAGAAGCCTTGCAAACCCACAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ACACCAAAATGGCATCTTCTCCAACGGCAGCAAAGCTGAGAAGCGCGGCCTCACTGCAGATCCTGGGAACCGCT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 ATGATGACATTGTGTCTAGGCTGTTGGAGCAGGGCGGCTGGCCAGGAGAGCTCCTGGCCTCGTGGGAGGTGCAG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GACTCTGCAGAAAGGAACGCATCCTCAGAAGAGGATCCCAATGCTGAACAGGCCCTCCTGCATCTCCCCTTCAC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 CATGGTGGCCGAGCAGAAGCGTCTGGATGACATCCTCAGGAACCTGTCCCAGCAGCCAGAGGAGCTACGGGACC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TCTACAGCAAGCACCTGGTGGCCCAGCTGGCCCAGGACATCTTCCGAAGCCACCTGGAGAACCAGGATCTGCTT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CCTAAGCCCTCTGAGCAGAGGTTTCCTCCCATGGCCGTCCCAGCTCACAAACATGTCTCTGGCTTCAGCAGCTC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CCTAAGGAGCTCATCTGGAGAGGCTGGAGGTGGCTCCCGTAGGCCTCATCGCAAGCCCGCCATCTTGCGGAAGA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TCTCAGCGGCACAGCAACTCTCAGCCTCGGAGGTAGTCACCCACCTGGGGCAGACTGTGGCTCTAGCCAGTGGG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 ACCCTGAGTGTGCTTCTGCACTGTGAGGCGGTAGGCAACCCAAGGCCCACCATCCACTGGACCAGGAACGGAGA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AGCAGTTCAATTCAGTGACAGGATTCTTCTACAGCCAGATGATTCCTTACAGATCTTGGCACCAGTGGAAGCTG 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 ATGTGGGTTTCTATACTTGCAATGCCACAAATGCCTTGGGATATGACTCTGTCTCCATTGCTGTCACATTAGCA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GGAAAGCCACTAGTGAAGACATCCCGAATGACTGTGCTCAACACAGAGAAGCCTACAGTCACAGTGGATATCGG 4514
Query 1 -----------------------------ATGTG---TTTGACTGATGAGTGGGGTTTTTTGTTTTTTTTTTTC 42
||||| .||.||||...|||||
Sbjct 4515 TGGCACCGTCAGAACCGTCCGAGGAGTGAATGTGACAATTAACTGCCAAGTGG--------------------- 4567
Query 43 TTCCTAGGAGTGCCTGAAGCTGAAGTCACTTGGTTCAGGAATAAAAGCAAACTGGGCTCC-------------- 102
.|||.||.|||||||||||||||||.||||||||.||||||||||||.||||||||
Sbjct 4568 ----CAGGTGTACCTGAAGCTGAAGTCACCTGGTTCAGAAATAAAAGCAAATTGGGCTCCTCCCACCACCTGCA 4637
Query 103 -----------CCGCACCATCTGCACGAAGGCTCCTTGCTGCTCACAAACGTGTCCTCCTCGGATCAGGGCCTG 165
|| |||||.|||||.||.||||||||||||||||||.|.|||||||.|||.|||||.||||||
Sbjct 4638 TGAGGGCTCCTCC-CACCACCTGCATGAGGGCTCCTTGCTGCTCACAGATGTGTCCTTCTCTGATCAAGGCCTG 4710
Query 166 TACTCCTGCAGGGCGGCCAATCTTCATGGAGAGCTGACTGAGAGCACCCAGCTGCTGATCCTAGATCCCCCCCA 239
||.|||||||||||.||||||||.||.|||||.|.|||.||||||||.|||||.|||||.|||||||||||.||
Sbjct 4711 TATTCCTGCAGGGCAGCCAATCTACACGGAGAACAGACAGAGAGCACGCAGCTCCTGATTCTAGATCCCCCGCA 4784
Query 240 AGTCCCCACACAGTTGGAAGACATCAGGGCCTTGCTCGCTGCCACTGGACCGAACCTTCCTTCAGTGCTGACGT 313
|||||||||||||||||||||||||||||||||||||...|||||||||||||||||||||||.|||||.|.||
Sbjct 4785 AGTCCCCACACAGTTGGAAGACATCAGGGCCTTGCTCTTAGCCACTGGACCGAACCTTCCTTCGGTGCTTATGT 4858
Query 314 CTCCTCTGGGAACACAGCTGGTCCTGGATCCTGGGAATTCTGCTCTCCTTGGCTGCCCCATCAAAGGTCACCCT 387
|.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||.
Sbjct 4859 CCCCTCTGGGAACACAGCTGGTCCTGGATCCTGGGAATTCCGCTCTCCTTGGCTGCCCCATCAAAGGTCACCCC 4932
Query 388 GTCCCTAATATCACCTGGTTTCATGGTGGTCAGCCAATTGTCACTGCCACAGGACTGACGCATCACATCTTGGC 461
..|||.||||||||||||||.||...|||.||||||||||.|||||||.|.||.|||||.||.|||||||.||.
Sbjct 4933 ACCCCCAATATCACCTGGTTCCAAAATGGCCAGCCAATTGCCACTGCCCCGGGGCTGACCCACCACATCTGGGG 5006
Query 462 AGCTGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTCAAGGGGAATTCAGCTGCCTTGCCCAGAATG 535
|||||||||||||||.|.|||||||||.||.||.||.||..||||||||||.|||||||||||.||.|||||||
Sbjct 5007 AGCTGGACAGATCCTACGAGTTGCAAATCTCAGTGGAGGACCTCAAGGGGAGTTCAGCTGCCTGGCTCAGAATG 5080
Query 536 AGGCAGGGGTGCTCATGCAGAAGGCATCTTTAGTGATCCAAGATTACTGGTGGTCTGTGGACAGACTGGCAACC 609
|.||||||...|||.|||||||.||.|||||.|||||||||||||||||||||||||||||.||||||||||||
Sbjct 5081 AAGCAGGGACCCTCCTGCAGAAAGCCTCTTTGGTGATCCAAGATTACTGGTGGTCTGTGGATAGACTGGCAACC 5154
Query 610 TGCTCAGCCTCCTGTGGTAACCGGGGGGTTCAGCAGCCCCGCTTGAGGTGCCTGCTGAACAGCACGGAGGTCAA 683
|||||.||.||.||||||||..|.||..||||.|||||.||..|.|||||..|.|||||||.||||||.||..|
Sbjct 5155 TGCTCCGCATCTTGTGGTAATAGAGGCATTCATCAGCCGCGACTCAGGTGTTTACTGAACACCACGGAAGTTGA 5228
Query 684 CCCTGCCCACTGCGCAGGGAAGGTTCGCCCTGCGGTGCAGCCCATCGCGTGCAACCGGAGAGACTGCCCTTCTC 757
|||||..|||||..||||.|||..|||.||.||.||||||||..|.||.|||||||||||||||||.|||||||
Sbjct 5229 CCCTGAGCACTGTACAGGAAAGCCTCGGCCCGCCGTGCAGCCTGTTGCCTGCAACCGGAGAGACTGTCCTTCTC 5302
Query 758 GGTGGATGGTGACCTCCTGGTCTGCCTGTACCCGGAGCTGTGGGGGAGGTGTCCAGACCCGCAGGGTGACCTGT 831
|.|||||||||||.||||||||.||||||||||||||.||.||.||||||||.||.|||||.||||||||||||
Sbjct 5303 GATGGATGGTGACGTCCTGGTCCGCCTGTACCCGGAGTTGCGGTGGAGGTGTACAAACCCGAAGGGTGACCTGT 5376
Query 832 CAAAAGCTGAAAGCCTCTGGGATCTCCACCCCTGTGTCCAATGACATGTGCACCCAGGTCGCCAAGCGGCCTGT 905
||.|||.|||||||.|||||.||.||.|||||.|||||||||||||||||||..||..|.|||||.||||||||
Sbjct 5377 CAGAAGTTGAAAGCTTCTGGTATTTCTACCCCGGTGTCCAATGACATGTGCAGTCAACTGGCCAAACGGCCTGT 5450
Query 906 GGACACCCAGGCCTGTAACCAGCAGCTGTGTGTGGAGTGGGCCTTCTCCAGCTGGGGCCAGTGCAATGGGCCTT 979
|||||||||||||||.|||||||||||.||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 5451 GGACACCCAGGCCTGCAACCAGCAGCTCTGTGTGGAATGGGCCTTCTCCAGCTGGGGCCAGTGCAATGGGCCTT 5524
Query 980 GCATCGGGCCTCACCTAGCTGTGCAACACAGACAAGTCTTCTGCCAGACACGGGATGGCATCACCTTACCATCA 1053
||||.||.||||.|||.||||||||.|||||.||.||||||||||||||.||||||||||||||||||||||||
Sbjct 5525 GCATAGGCCCTCGCCTTGCTGTGCAGCACAGGCAGGTCTTCTGCCAGACCCGGGATGGCATCACCTTACCATCA 5598
Query 1054 GAGCAGTGCAGTGCTCTTCCGAGGCCTGTGAGCACCCAGAACTGCTGGTCAGAGGCCTGCAGTGTACACTGGAG 1127
||||||||||||||.||.||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 5599 GAGCAGTGCAGTGCCCTCCCCAGGCCCGTGAGCACCCAAAACTGCTGGTCAGAGGCCTGCAGTGTACACTGGAG 5672
Query 1128 AGTCAGCCTGTGGACCCTGTGCACAGCTACCTGTGGCAACTACGGCTTCCAGTCCCGGCGTGTGGAGTGTGTGC 1201
|||||||||.||||||||.|||||.||.||||||||||||||.|||||||||||||||||.|||||||||||.|
Sbjct 5673 AGTCAGCCTCTGGACCCTATGCACGGCAACCTGTGGCAACTATGGCTTCCAGTCCCGGCGGGTGGAGTGTGTTC 5746
Query 1202 ATGCCCGCACCAACAAGGCAGTGCCTGAGCACCTGTGCTCCTGGGGGCCCCGGCCTGCCAACTGGCAGCGCTGC 1275
|.|..||||||||||||||.|||||.|||||||||||.|||||||||||||||||.|||||||||||.||||||
Sbjct 5747 ACGTGCGCACCAACAAGGCTGTGCCCGAGCACCTGTGTTCCTGGGGGCCCCGGCCCGCCAACTGGCAACGCTGC 5820
Query 1276 AACATCACCCCATGTGAAAACATGGAGTGC-------------AGAGACA--------------------CCAC 1316
|||.||||.|||||||||||| |||.| ||| ||| |||.
Sbjct 5821 AACGTCACTCCATGTGAAAAC----AGTACGTTCCAATCCCAAAGA-ACATTCTGCAAATTCCCTACAGGCCAT 5889
Query 1317 CAGGTACTGCGAGAAGGTGAAACAGCTGAAACTCTGCC--AACTCAG----------CCAGTTTAAATCTCGCT 1378
|.||||| ||| |.|.||...|||..|||..||| |||.||| |.||| ||.|
Sbjct 5890 CGGGTAC----AGA--GGGCAATCCCTGGGACTGAGCCTGAACACAGGGCACTGGATCAAGT-----TCCC--- 5949
Query 1379 GCTGTGGAACTTGTGGCAAAGCG 1401
Sbjct 5950 ----------------------- 5949