Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12996
- Subject:
- XR_001747264.1
- Aligned Length:
- 4622
- Identities:
- 1894
- Gaps:
- 2719
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGGCGGGGCGCGGCGGCAGCGGAGCGTTGTCGGCCAGTGCCTTCCGTGAAGTTGCTCGCCGGGTCGTTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTCGACCTGTAGGCGGGCGAGCGAGCCAGCGGACAAGACTGCGGGTGAGGCTGAGCTAGCGAGCGGCCGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGGGGGCGCCCGGGCTGCGAGCCGCTGAGCCCAGCCGCGCTGCCGCCGCCGGCCGTCGTGGGGCCGGAATGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAAGGCCGGAGTGGCGCGGGCGCTCGGCGCTGGGCTGCCGGGTAGAGTCCTGTCCCCGCCCCTCGCCTTGCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGACGCCGGCCGCTGCTGCCCGGGGACCGGAGCGGCGGGCCGCCTTTGCCCAGGACACACGCTCTGGCGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTCCTTTGGGCGTGACGCCAGCTTCAACGGGTACGCGGCTTTCCCGACGGGTGCTGATCTCCGAGTCGCTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTCACGCGGACTGCTGTCCTCCAGATTCAGGCCGGTGGGTCTGGGGAGCCCGGATTGGTCTTGGAGGAGCAACG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGCGCAGGTACAAAACTCAAAACATGAACAACAATATATATTACCAATCTTCAAACCTGGTTTGCCTAGAAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGAATACAGTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTCTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTGATACCATGGAGCTCTTCATT 740
Query 1 ----------ATGGAAC--------------------------TTGAAAATGATTATTGCT-TGAATG-----A 32
.|||||| ||||||.|| |||||.|| ||||.| |
Sbjct 741 GAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTG-TTATTTCTGTGAAAGCAAAAA 813
Query 33 TTACAA---------CATTTCAGAAGGGTGGACCTTGAAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATA 97
||..|| |||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TTCGAAGATTGGAAGCATTTCAGAAGGGTGTACCTTGAAGCTAGTTTTGGCTATGCGTGGCGGACCTATAAATA 887
Query 98 CTAGAAGAGTTCCTACAGACGATCCACTTAGGACGATGGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGG 171
|||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CTAGAAGAGTTCCTACAGACGATCCACTTAGGAAGATGGCAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGG 961
Query 172 GAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATTGAATTTCTTTCCTGC 1035
Query 246 AGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCC 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATTTTCATTTGCATGTCC 1109
Query 320 TACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGATGAGGATGAAGAAACT 1183
Query 394 GAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGCTGCTGAAGGCTAA 1257
Query 468 GATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCACCTGTAGCTCCTC 1331
Query 542 GACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 GACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGT 1405
Query 616 TCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTC 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGGCAACTCAACTCTC 1479
Query 690 TGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAGAATAACACACTGT 1553
Query 764 CTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCT 1627
Query 838 GACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAA 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACTTGCCATCTAGTAA 1701
Query 912 TGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTT 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 TGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTGGGCTCACTGGCTT 1775
Query 986 CATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTA 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 CATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTA 1849
Query 1060 CTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGA 1923
Query 1134 ATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCT 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 ATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTGTCACCTCTTCGCT 1997
Query 1208 GTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAG 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 GTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAG 2071
Query 1282 CTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTT 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 CTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTAGGACTACTTGCTT 2145
Query 1356 TCAAGGTGTTAAAGTTGATTCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAG 1429
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 TCAAGGTGTTAAAGTTGATTCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCTCGGGATATCACAG 2219
Query 1430 AAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGG 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 AAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGCCTCACTGGCCGGG 2293
Query 1504 AGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTAC 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 AGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTAC 2367
Query 1578 AAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGT 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368 AAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACAGGAGTTTTTTT-- 2439
Query 1652 CTACCCATGGTGTTGGAATGAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGAGAATGTACTACTCATCAC 1725
|||||||||||||||||||||
Sbjct 2440 -----------------------------------------------------GGAGAATGTACTACTCATCAC 2460
Query 1726 CTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAAC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 CTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTTGTGGAAAGAAAAC 2534
Query 1800 AGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATG 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2535 AGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTATGCAGAAACTCATG 2608
Query 1874 GCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAG 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2609 GCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGTTAATGCACCAAAG 2682
Query 1948 CTTCCAAAAATC-------------------------------------------------------------- 1959
||||||||||||
Sbjct 2683 CTTCCAAAAATCTAACTCTTCCTCTACATCTTACTGTTCTGCCCGGGATTCGTATTATAATGACAGAAGAAATG 2756
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2757 TTGTTTAGACTATTATTTTTGTTCGACTCTAAAAGATTTGCCAAATAACAAAAGCATACAATGCATACTGTTGG 2830
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2831 AGAACAAGAATGCTACTGTATTTTACATCTTTATTTCTTGGTGAAACAAAAGTTTTAAAAGTAGTTTTAACAAC 2904
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2905 TTTACACTGGAATGATTTAGCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTGTATATGATATTGCAGTTTTA 2978
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2979 CTAGGCAAATCTTCAAAAGATGCACTTTAGGAAACGAAATATTTCCTAAATAACCAGGCTTCCACATTGTACAG 3052
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3053 AATGAGCAGTCATGTAATGAATGGCTCTACTCAGATTGACCATATGGGTTTTTTCTTTTTCTTTCTTTTATTCT 3126
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3127 TCTCCTTCTTTTTTTTTCAGAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCACGTGTGAAAGTTTACTGGCT 3200
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3201 TTATTAGCAAGTTCCTTTTTACTTCAAGCTACTTTTTATAAAAAAGAACATTTTTCCAGTGTGGTTTTTAACAG 3274
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3275 ATAATACATTTCTTCCACATTCAGATTAGTATTCGGACATGAATCCATTCTATAAAACACATCGTGTTCATGAT 3348
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3349 AGTGTATATTTTACTACTTTTTGAATGTTAATTTTAAAATAGAAGATGTCCCACTTGCCATTAAATATAGAAGC 3422
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3423 CAACTTTTTACCTTTTGAAATATGGCTACATTTAAAACAAAATCTCACAGCTCGGTTTTTCTTATTTGTTGAGT 3496
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3497 GCTATTACCAGGAGAAATTCAAATAAATATTCAATTTCATTATGAATTTCATTATTTATTTATAATAGTTTTTC 3570
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3571 TTTTATAAATAATTTTTCTTTTATAAAACTATTTAATTAAATGAGTGATTTATTTTACGTGGATAAAATAACTA 3644
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3645 TCAGTATAAAAATATTCTTTTAGGATATTAAGGACCCTGTTCCCCAGGTGTAACCAGAAACCACTAAGGCACTT 3718
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3719 AGTGGCCACTTGCTGTATAGAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAAACAACTAGCACCTAACCCAG 3792
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3793 GTAGACTCTGCAGCCCTGGGGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCTAAGAGTACCAGAAGGCTAAC 3866
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3867 TTAGGAGCTGTGAGGGGCCCCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGCTCACTGCCCCTGCTCCTGTA 3940
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3941 AGAAATGAAATGTTGATGGAGACAGATGCCTTCAGACAAAGAGGGCAGTACATTCATAAGAGGGAATGGCTAAA 4014
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4015 AGTTAGCAGAGGAGCTATGCAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGGTGGATATAAGTAGATGAAAA 4088
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4089 ATACTTTCATCTGTGTTATGAATAATTCAGTATTTCCTCCTGTATCAAGAAGACACGTGTTTTAGACACTTAAA 4162
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4163 ATATAAGAACTGCCTTACAGAGTTAGACTGCTGAGAAATGGACCATAGCATATTTATTCTGCAAACAAATATGA 4236
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4237 ATGCCTAGGGCCTACTTGATGTAGTGTGCTATGCTTTTTAAACCAAGACTATAAGTAGAAGTAAGTCTCATTCT 4310
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4311 AAGTTTTACTAAAGATTGTGGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAACTGACAGCTGAACTATTTTA 4384
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4385 ATTCAACAAGTTATATCATTATATTGAGGGGCATTTCTTTATGCTTTAAATTCTTACACAGACACATTCCAAAT 4458
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4459 TTTAGAGACATTGTATCTGTCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGCCTGTAGGTACTGGTTAAACA 4532
Query 1960 ---------------------------------- 1959
Sbjct 4533 TTAGTTGAATAAATTGATGCATTGGACAACTTAA 4566