Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13061
Subject:
XM_011247711.2
Aligned Length:
2010
Identities:
1240
Gaps:
633

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCTGTCTCTGCACCTCCGGTGATCTCTGCAACTTCCAGCAGCGCCGGCGTCCCGGGGGGTTTATTCCGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGAACCCCTGTATTCGTCTCCAGGAGAGCCCCCTCGCCTAACCCCTAACATGATCAACAGTTTCATGGCCAATA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCATAACGGCAGTGTCTTGGGTGGCGGGATTGGTGGTGGCAGCGGTGGCAGCAGCAACACCAACACAAACGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGCCGGATGGTCGACATGCACGGGGTGAAGGTAGCTTCATTCCTGATGGATGGCCAGGAACTGATCTGCCTGCC  296

Query    1  ----------------------------------------------------------ATGC--CAGAGTTTCG  14
                                                                      |.||  .||||..|||
Sbjct  297  GCAAGTCTTTGACCTTTTCCTCAAGCACCTGGTGGGAGGGTTGCACACAGTGTACACTAAGCTGAAGAGACTCG  370

Query   15  ------CTC---TGTTGCCCAGGCTGCAGTGCA--------------GTGGTGTG------ATC---------T  50
                  |||   ||.||..||  |||.||.|||              ||||..||      |||         .
Sbjct  371  ACATATCTCCGGTGGTGTGCA--CTGTAGAGCAAGTTCGAATCCTCCGTGGGCTGGGGGCCATCCAGCCAGGGG  442

Query   51  TGGCTCGCTGCAA-CTTCCGCCTC-CCAGG-------TTCAAGGGATTCTTGTGCCTCAGCCTCCCGAGT----  111
            ||..|||.||||| ||    |.|| |||||       ||.||   |.| ||||   |||     ||||.|    
Sbjct  443  TGAATCGTTGCAAGCT----CATCACCAGGAAAGACTTTGAA---ACT-TTGT---TCA-----CCGATTGCAC  500

Query  112  -------AGCTGGAA---------------------------TTACAGTTCAAGACCCGGCAGGCCCCCTAAGC  151
                   ||..||||                           |.||||||||||.||.||||||||||||||||
Sbjct  501  CAACGCCAGAAGGAAGAGGCAAATGACAAGGAAACAAGCTGTTAACAGTTCAAGGCCTGGCAGGCCCCCTAAGC  574

Query  152  GTTCTTTGGGAGTGTTGCAGGAAAATGCCCGCCTTCTGACCCATGCAGTCCCAGGCCTCTTATCGCCAGGACTT  225
            |||||||||||||.|||||.||.||||||||.||||||.|||||||||||||||||||||||||.||||||||.
Sbjct  575  GTTCTTTGGGAGTATTGCAAGATAATGCCCGACTTCTGCCCCATGCAGTCCCAGGCCTCTTATCACCAGGACTG  648

Query  226  ATCACTCCGACAGGTATAACAGCTGCAGCGATGGCTGAGGCGATGAAACTTCAGAAGATGAAGCTTATGGCTAT  299
            ||||||||.||||||||.|||||||||||||||||||||||.|||||.||.||||||||||||||||||||.||
Sbjct  649  ATCACTCCAACAGGTATCACAGCTGCAGCGATGGCTGAGGCCATGAAGCTCCAGAAGATGAAGCTTATGGCAAT  722

Query  300  GAACACTCTTCAGGGAAATGGAAGCCAAAATGGGACCGAATCAGAGCCTGATGATCTTAATTCTAACACAGGTG  373
            |||.|||||||||||.||||||||||||||||||||.||.||||||||.|||||.||||||||||..|||||||
Sbjct  723  GAATACTCTTCAGGGTAATGGAAGCCAAAATGGGACTGAGTCAGAGCCAGATGACCTTAATTCTACGACAGGTG  796

Query  374  GAAGTGAATCCTCCTGGGATAAAGATAAGATGCAGTCTCCATTTGCTGCACCTGGACCCCAACATGGAATTGCT  447
            |||||||||||||||||||||||||||||||.||.||||||.|||||||..|||||||.|||||||||||||||
Sbjct  797  GAAGTGAATCCTCCTGGGATAAAGATAAGATACAATCTCCACTTGCTGCTTCTGGACCTCAACATGGAATTGCT  870

Query  448  CATGCAGCCCTAGCTGGCCAGCCAGGCATTGGGGGTGCTCCAACCCTCAATCCACTGCAGCAGAACCACCTGCT  521
            ||||||||.||.|||||.|||||||||.||||.||||||||.|||||.||||||||.||||||||.||||||||
Sbjct  871  CATGCAGCACTTGCTGGTCAGCCAGGCCTTGGAGGTGCTCCGACCCTTAATCCACTTCAGCAGAATCACCTGCT  944

Query  522  AACCAATAGACTGGATCTGCCATTTATGATGATGCCTCATCCCCTACTTCCAGTCAGCTTACCTCCTGCATCAG  595
            ||.||||.|.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  945  AAGCAATCGTCTGGATCTCCCATTTATGATGATGCCTCATCCCCTACTTCCAGTCAGCTTACCTCCTGCATCAG  1018

Query  596  TTGCCATGGCAATGAATCAGATGAACCATCTCAATACTATTGCCAACATGGCTGCTGCAGCACAGATTCACAGT  669
            |||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1019  TTGCCATGGCAATGAATCAGATGAATCATCTCAATACTATTGCCAACATGGCTGCTGCAGCCCAGATTCACAGT  1092

Query  670  CCACTCTCCAGAGCTGGTACCTCTGTTATAAAGGAGCGGATCCCAGAGAGTCCTTCTCCTGCTCCTTCTCTAGA  743
            ||||||||||||||||||.||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||
Sbjct 1093  CCACTCTCCAGAGCTGGTGCCTCTGTTATAAAGGAACGGATCCCAGAGAGTCCTTCTCCTGCTCCCTCTCTGGA  1166

Query  744  AGAGAATCATCGTCCTGGGAGCCAGACCTCTTCCCACACCAGCAGCAGTGTGTCCAGCTCTCCCTCTCAGATGG  817
            |||||.||||||||||||||||||||||||.||||||.|.||||||||||||||||||||||||||.|||||||
Sbjct 1167  AGAGAGTCATCGTCCTGGGAGCCAGACCTCCTCCCACCCAAGCAGCAGTGTGTCCAGCTCTCCCTCGCAGATGG  1240

Query  818  ATCATCATTTGGAAAGAATGG-----------------------------------------------------  838
            |||||||||..||.|||||||                                                     
Sbjct 1241  ATCATCATTCAGAGAGAATGGTTATGATGCCCAACAATCGAGAAGAGCTTATTGTTGACCAAGATAATGGACAA  1314

Query  839  --------------------------------------------------------------------------  838
                                                                                      
Sbjct 1315  AGCATAAAAAAATTCCAGAGGGATAATAAAGATATCCAATTGTCCCAGCACCATTTGTTGAACACTTTTCTTCA  1388

Query  839  -----------------------------------------------AAGAGGTACCAGTTCAAATTCCAATAA  865
                                                           ||||.|||||||.||||||.|||.|.|
Sbjct 1389  CTGGATTGAGTTGGCACCATTATCAAAAAAATCACTTCACCATCAAAAAGAAGTACCAGCTCAAATCCCAGTCA  1462

Query  866  TGAAGTCACCCTTGGACAAGATACAGCTGACTCCTGGGCAGGCATTGCCCGCTGGATTCCCTGGACCATTCATT  939
            ||||||||||||||||.|||||.|||.||.|||||||.||||||||||...|||||||||||||||||||||||
Sbjct 1463  TGAAGTCACCCTTGGATAAGATCCAGTTGGCTCCTGGACAGGCATTGCATCCTGGATTCCCTGGACCATTCATT  1536

Query  940  TTTGCTGATAGTCTGTCCTCCGTGGAGACTCTGTTGACCAACATTCAGGGTCTGCTGAAAGTTGCTTTGGATAA  1013
            |||||.||||||||.||.||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1537  TTTGCAGATAGTCTATCTTCTGTGGAGACTCTGTTGACCAACATTCAGGGTCTACTGAAAGTGGCTTTGGATAA  1610

Query 1014  TGCTCGCATCCAGGAGAAGCAGATTCAACAAGAAAAGAAGGAGCTGCGACTGGAGCTCTATAGAGAGAGAGAAA  1087
            ||||||.||||||||||||||||||||.||.|||||||||||.||||||.|.|||||||..|||||.|||||||
Sbjct 1611  TGCTCGTATCCAGGAGAAGCAGATTCAGCAGGAAAAGAAGGAACTGCGAATAGAGCTCTTCAGAGAAAGAGAAA  1684

Query 1088  TTAGAGAAAACCTTGAAAGACAACTTGCAGTTGAGCTTCAAAGCAGAACTACTATGCAAAAGCGCCTGAAGAAG  1161
            |||||||||||||.||..||||||||||||||||||||||||||||||.|||.|||||||||||.|||||.||.
Sbjct 1685  TTAGAGAAAACCTGGAGCGACAACTTGCAGTTGAGCTTCAAAGCAGAAGTACAATGCAAAAGCGTCTGAAAAAA  1758

Query 1162  GAGAAAAAAACCAAGAGAAAATTGCAGGAAGCCTTGGAATTTGAATCAAAGCGCCGGGAGCAAGTGGAGCAGGC  1235
            ||||||||..|.|||||||||.|.||||||||||||||||||||||||||||||||.||||||||||||||.||
Sbjct 1759  GAGAAAAAGGCTAAGAGAAAACTTCAGGAAGCCTTGGAATTTGAATCAAAGCGCCGCGAGCAAGTGGAGCAAGC  1832

Query 1236  ACTTAAGCAAGCCACCACTAGTGACAGTGGCCTGAGGATGTTAAAAGATACTGGAATTCCAGATATTGAAATAG  1309
            ||||||.|||||.||..||.||||||||||.|||||.||||||||||||.||||||||||||||||||||||||
Sbjct 1833  ACTTAAACAAGCTACATCTGGTGACAGTGGACTGAGAATGTTAAAAGATTCTGGAATTCCAGATATTGAAATAG  1906

Query 1310  AAAACAATGGGACTCCTCATGATAGTGCTGCTATGCAAGGAGGTAACTATTACTGTTTAGAAATGGCACAACAG  1383
            ||||||.|||.||.||.|||||.|||||||||||||||||||||||||||||||||||||.|||||||||.|||
Sbjct 1907  AAAACAGTGGAACGCCGCATGACAGTGCTGCTATGCAAGGAGGTAACTATTACTGTTTAGCAATGGCACAGCAG  1980

Query 1384  TTGTATTCAGCC  1395
            ||||.|||||||
Sbjct 1981  TTGTGTTCAGCC  1992

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