Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13068
Subject:
XM_017015619.1
Aligned Length:
4310
Identities:
1673
Gaps:
2620

Alignment

Query    1  ATGATGCAAGGAAATAAGAAGTGCACAGACGCGTTCAGCGACTCCTCCAGCATCGGCAGCGTGTTGGATGATGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGACAGGGAGGTGAGCAGCCTAACAGACCGGGCATTCCGGAGTTTGTGCATCTCCGAGGACACATCCTTCCATG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACTCCTATCTGGCTGTGTCCCCGGATATCACCCGACAGGTGTTTGGGACTTTTCACCAGAGAACAGTGGGCCAC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ACCCAGAGGAAAAGTGGCATTTGGAGCCAGTTACCGTCACAGGGCACGGAACATTCGGGCTGGGCGGCCACCTT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CCAACAGCTACCCAAGTACGTTCAGGGAGAGGAAAAGTACCCCAAAACCAGCCCCCCACCAACGCCAGTCCAGA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GGAGACTGGAGGTGCCAGTTTCCGGCCTAAGGAGCAGCAATAAGCCTGTCTCCAAAGTATCAACACTAATTAAA  444
                                                                                     |
Sbjct    1  -------------------------------------------------------------------------A  1

Query  445  TCTTTC-GAC----AGGACCGAGAGCCAACGTTGTGAGAGCAGGCCCACTGCCAGCAAGCCTCCGGCTCTGAAA  513
            |..|.| |||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    2  TGATGCAGACAGGGAGGACCGAGAGCCAACGTTGTGAGAGCAGGCCCACTGCCAGCAAGCCTCCGGCTCTGAAA  75

Query  514  AATCCTCCCAAATTCGCTCCTCTTCCAGAAAACAGTGTCAACTTCTGCTTCGATTCTGCCTTTCTGACAGTCAG  587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   76  AATCCTCCCAAATTCGCTCCTCTTCCAGAAAACAGTGTCAACTTCTGCTTCGATTCTGCCTTTCTGACAGTCAG  149

Query  588  GAGGGTGCCCGCTGAAGTTTCCAACACCCATCAGAACAGCTACCAGCCAGGCAGGAAGCACGGAGAACAGGAGT  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  GAGGGTGCCCGCTGAAGTTTCCAACACCCATCAGAACAGCTACCAGCCAGGCAGGAAGCACGGAGAACAGGAGT  223

Query  662  CCTCCAAGAATCCAGAAATGGCCTGTCACGGCTCCAGCAGCTTCCTCCCAGCAGCCAATGACACGGCCACCTTA  735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  CCTCCAAGAATCCAGAAATGGCCTGTCACGGCTCCAGCAGCTTCCTCCCAGCAGCCAATGACACGGCCACCTTA  297

Query  736  TGTGAGTCAAAGTTCCCCTCTCCACACCACAAGCCAGTCACGGGTGAGCCTGGGAGAGGCAAAGGTACCTTTCT  809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  TGTGAGTCAAAGTTCCCCTCTCCACACCACAAGCCAGTCACGGGTGAGCCTGGGAGAGGCAAAGGTACCTTTCT  371

Query  810  GCACAGTGAAAATAGTGCTTTTGAGTCATGGAATGCCCACCAACCAAAGCTGCTGGAGAGAAAGGACACAGCTG  883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  372  GCACAGTGAAAATAGTGCTTTTGAGTCATGGAATGCCCACCAACCAAAGCTGCTGGAGAGAAAGGACACAGCTG  445

Query  884  GAACCGTCCCAGAAAGCAAAGCTCCCAAGCACTATGGGGACACGACCTTGCTAAGAGAACCCTGTCCTCCTGAG  957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  446  GAACCGTCCCAGAAAGCAAAGCTCCCAAGCACTATGGGGACACGACCTTGCTAAGAGAACCCTGTCCTCCTGAG  519

Query  958  CTCACAGTCTCTCCCTGCCAGGTCCAGGCCAGCTGCAGTCAGGAAGAGAACAGACTCGAAGCAGGGGCTCTGTC  1031
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||.|.|||||||||||||||
Sbjct  520  CGCACAGTCTCTCCCTGCCAGGTCCAGGCCAGCTGCAGTCAGGAAGAGAACAGACTTGCAGCAGGGGCTCTGTC  593

Query 1032  CACATCTATACCCTGGGGGTGCAGGGATCCAGGAGCCCAGGTATTTGCTGTGGAAGGAAAAGCTCCCAGCTCAC  1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  594  CACATCTATACCCTGGGGGTGCAGGGATCCAGGAGCCCAGGTATTTGCTGTGGAAGGAAAAGCTCCCAGCTCAC  667

Query 1106  AACCTGATTCTCAAGAGAAGCCAGCCCAGCCCCCATGGAGGAAGCCAAAGACTGGCAAAAAAGGGAAAGAAAGT  1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  668  AACCTGATTCTCAAGAGAAGCCAGCCCAGCCCCCATGGAGGAAGCCAAAGACTGGCAAAAAAGGGAAAGAAAGT  741

Query 1180  CTACAAGATACTTTAGAAGAAAAGACACAGACCAACCAGAGAGGCCCACCTTTGTATACAAAACACAACCCCCA  1253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  742  CTACAAGATACTTTAGAAGAAAAGACACAGACCAACCAGAGAGGCCCACCTTTGTATACAAAACACAACCCCCA  815

Query 1254  GGAACAGTTTTCAGAAAACAATGCTCTTGACCTGCCTGTGGAACCCAATGAACATTATGATCCCCCCTTTAACA  1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  816  GGAACAGTTTTCAGAAAACAATGCTCTTGACCTGCCTGTGGAACCCAATGAACATTATGATCCCCCCTTTAACA  889

Query 1328  TCAGTAAGCTCCTGACCCCCATCATACCCAGCAAGCACGCCCTGGATTCAGCAGCCAGCCAGCCAGCAGAGCGA  1401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  890  TCAGTAAGCTCCTGACCCCCATCATACCCAGCAAGCACGCCCTGGATTCAGCAGACAGCCAGCCAGCAGAGCGA  963

Query 1402  ACCCCATCACCCCCAGGACAGCTAAACGGATACCAAGAGAAGGAGCCCAGTGAATGTCAGTCTCGAGACAGCTA  1475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  964  ACCCCATCACCCCCAGGACAGCTAAACGGATACCAAGAGAAGGAGCCCAGTGAATGTCAGTCTCGAGACAGCTA  1037

Query 1476  CAAGTCCAAAGCCCCTAGCCTGCTGTTCAACCTCAAGGACGTGCGGAAGCGTGTTAAGAGCACATACAGTTCCT  1549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038  CAAGTCCAAAGCCCCTAGCCTGCTGTTCAACCTCAAGGACGTGCGGAAGCGTGTTAAGAGCACATACAGTTCCT  1111

Query 1550  CACCTCTCTTGAAAGTGCTTGATGAGAAAACTAGAGGTAAGGTTGATGGAAAGCAAGAACCTGTGAGCAACGGT  1623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112  CACCTCTCTTGAAAGTGCTTGATGAGAAAACTAGAGGTAAGGTTGATGGAAAGCAAGAACCTGTGAGCAACGGT  1185

Query 1624  GTCATCCTCCCCAATGGGCTTGAGGAAAGCCCTCCAAATGAGCTTTCTAAGGAGAGACCCGCTGATGACCCCAC  1697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186  GTCATCCTCCCCAATGGGCTTGAGGAAAGCCCTCCAAATGAGCTTTCTAAGGAGAGACCCGCTGATGACCCCAC  1259

Query 1698  TGCATCACACATCAATCCCCAGAAGGACCCTACAGCTGACCCCAGTGAGCCCTCTGCAGACAGCTATCTAACTC  1771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260  TGCATCACACATCAATCCCCAGAAGGACCCTACAGCTGACCCCAGTGAGCCCTCTGCAGACAGCTATCTAACTC  1333

Query 1772  TTAGCACAGCTCCGACTATCGCCAAAGCCCCCTTCTATGTCAATGGGGAGGCTGCTGAGAGAAGCAGTTATGAG  1845
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334  TTAGCACAGCTCCGACTATCGCCAAAGCCCCCTTCTATGTCAATGGGGAGGCTGCTGAGAGAAGCAGTTATGAG  1407

Query 1846  AACAAGGAGGTGGAAGGAGAGTTGGAGATGGGTCCTGCCGGATCCAGCTGGTGTCCAGACTCCAGGGAACACCG  1919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408  AACAAGGAGGTGGAAGGAGAGTTGGAGATGGGTCCTGCCGGATCCAGCTGGTGTCCAGACTCCAGGGAACACCG  1481

Query 1920  CCCCAGGAAACACCTCTCCCTGAGGCTTTGCAATAGGGATCCTGAGCCTGGAGGGGCTACAGAGAAAATGAAGA  1993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482  CCCCAGGAAACACCTCTCCCTGAGGCTTTGCAATAGGGATCCTGAGCCTGGAGGGGCTACAGAGAAAATGAAGA  1555

Query 1994  CCCACCAGCTAGAGAATGGGCTCTCCAGATCTGTGTCCCAAGAGACAGAACCTGAGAGGGAAGCAGGACTTCAG  2067
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556  CCCACCAGCTAGAGAATGGGCTCTCCAGATCTGTGTCCCAAGAGACAGAACCTGAGAGGGAAGCAGGACTTCAG  1629

Query 2068  AACACACA-------CACACA-----------------------------------------------------  2081
            ||||||||       ||.|.|                                                     
Sbjct 1630  AACACACATTTGAACCAGAAATTCTTCCCAGGGCCCCTCTCTCCTGAGGAGGAAGATGTGTTTTACAGTGACAG  1703

Query 2082  ------CGAT-------CA----------------------TCAACAC---------------ATACTTAGCCT  2105
                  ||||       ||                      |||.|||               ||.|||.||||
Sbjct 1704  CCAATCCGATTTTATGCCAAGCCTCAAAGGTAAGGCCAAATTCAGCACCAGCTCTTCAGATCAATCCTTTGCCT  1777

Query 2106  --TTTTA-GATC--CATAAAGT---------------CCA----GAAGGCAG----------------------  2133
              |||.| ||||  ||.||..|               |||    ||||.|||                      
Sbjct 1778  CATTTGATGATCAGCAGAAGATGTGGTTTACTGAGAACCAGCGGGAAGACAGGAGGAAGGATGTGAGTGCAGGT  1851

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 1852  GACAGTCAGAAGGATGAGAAGGAGAATGTGATGCGGAAGGATGAGCTGCAGTACTGTGCCTTAAGCAATGGGCA  1925

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 1926  CGCATGCCTGGAAAACCGCAGCCAGGGGGAAGCATTGCAAAGAGAAAGGGAAAGTGTGTCTGGAGGAAGAACCA  1999

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2000  GGAAGGCATCAGCAGAGGAAGCTAATTTCAGAGGCTCTTGGATTGGGGAAAATAAGGGCACAACCTTTTCACAG  2073

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2074  GCCAAAGACCTTACTCCCTCACCATCTTCTGCTTCAAACAGGCACATGCTGTTTACGATTAAAGACAACACCCT  2147

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2148  CAGAGCTACCCCCGTAATTAAACCTATCATGCTGCCTCTCCTGAGGACCATGTCCTTGGAGGACTCCCTCAGCA  2221

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2222  GTGGCCACAAAGAGGAGGAATTGCCAAGGCCAGAATGGGGTGAGGATCCTGGGTTTTGTGCCCCCGAAAACCAG  2295

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2296  GACATTCTTGGTACATCGACACCCACTAACACACGGGGCACACGTGTGAAGTGCATGGCCAACGAGGTCATGGA  2369

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2370  GGACCCTGGGCAGGGGTCGAGCATGGCCAGGATGGAGGCCTCTCAGCCAGCCCCAAAGGGGAATTTCCCATCTA  2443

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2444  TGCCTCTGGTGGGAGAGGGGGACCGGGTGAAGGCACCACCAGATGCTGCACCTGGCCTCGTGGCAAGCAATTGC  2517

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2518  AAGAGCGGTTCTGCAGACTCAGGGAAGCTGGCAGCCCCATGGCACATCCCCACCATTGCTTTACCCGAGGGTGA  2591

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2592  CATAGAAGACCAGCCACCCCCATGGCAGCCCGAAAACTGTTGGGAAGAGCAAACACCAGGTTTCAAGAGTCACT  2665

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2666  TTTTGTCCACACCCAGAGCAGGGCCCCCTGGCAGAAGACTGGTCCCCAGTGAGAGGGCGAATTCCCCCAACCCC  2739

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2740  GGCTCCCCCGGGGAGAGCAGTGCCTGCTCCCCTGCTGCCAGCAACATTTGGGAGGAGTCTTCCCAGGCCCCTGG  2813

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2814  AGGACCAGAGCTGCTTCCCGAGGAGCCTAATCAAGCCAGCCCCTGGGCCAGCTCCAGTCCTGCCAGGGTCACCC  2887

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2888  GGAGGGAGGACCTGACCCACGCCCTCGTGTGGGAGGGCGGCTCTGACCCCCTACTTGAGCTGTCGGCAGAAGAC  2961

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 2962  CTCCGGACCCTCTCTCCAAGAGGTTCATTGCTGGATGTGGCCACCAGCCCAGCAGGCACCTCTGGGAGACTTGA  3035

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3036  GCTTCCTGCACAGCTAGAGAGGACAGCAAGCAAGCCACCTGCAGTCCCACCCAAAACAGAGAAAGCCCTGCGGC  3109

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3110  GGGCAAAGAAGCTGGCAAGTAAGAGGAGGAAGACGGATCAGGCTCAGGAGAAGCATGGCGAGTCACAGGAGGGA  3183

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3184  AAGCCCTGCCCGGAGGACTTGGAGCAGACACAGCAAAGGCCGCTGTGCCCCAGAGAGAGGCCCCGACACAATTT  3257

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3258  CCCCGTGGTCCGTTCCCTGCCCCCTCCCGTGCACCGCCACTCCGTGTCCGGCTTCTCGGAGCCTGTCGGGAGGC  3331

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3332  GGCCCGGGGGCCCCCAGTCCCTCACACCCCTGCCCGCGTACCCCGCCACCCAGAAGGTCCTCCAGGATCCGCAG  3405

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3406  TCCGGGGAGTACTTTGTCTTCGACTTGCCACTCCAGGTGAAAATCAAGACCTTCTATGACCCAGAGACGGGCAA  3479

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3480  GTATGTCAAGGTCTCCATCCCGTCCTCCGAGGGGGCCTCCCCAGAGCCGCCCCCACCGGACGCCCTGGCCGCTC  3553

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3554  CCTATGTGCTGTACCCCGGCTTCCAGCCAGTGCCCGTGACGGCCTTGATGCCGCTGCGCTGCTCCTCTCAGCTC  3627

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3628  TCCGCGCCCACCTTCCTCAGGCAGGGCCCTCGTGCCTCCGCGGCCCGCGCCAGGACCCAGAGTGTCCACGAGTC  3701

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3702  TGGACTACAGCTGGACCCAGGGCCTCACGGTGACTGCACCCCGCACTCTGCAGGCCAGCGCCCTCATGGTCCTC  3775

Query 2134  --------------------------------------------------------------------------  2133
                                                                                      
Sbjct 3776  CCCAGAGCCCAGGAGAGGAGGGTGTAGAAGCTCCAGGCCTGGGCATCATCTCCACTGATGACCTAGAGGACTTT  3849

Query 2134  ------------------  2133
                              
Sbjct 3850  GCCACAGAAGGCATTTCT  3867

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