Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13287
Subject:
NM_001109749.1
Aligned Length:
3080
Identities:
1889
Gaps:
991

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGGTTGCCATGGGAACTGCTAGTGCTGCAATCATTCATGTTGTGCCTTGCAGATGACTACACACTGCATGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATTCTGAGGAGAAAAAAGTGAAACTCAGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGAAGTTAAAGGGAATCCAAAACCTCACATCAGGTGGAAGATAAATGGAACAGATGTTGACATTGGTATGGAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTCCGCTACAGTGTTGTTGACGGCAGCTTGTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGCATAGCAACAAACTCATTTGGAACAATTGTAAGCAGAGAAGCAAAGCTTCAGTTTGCTTATCTTGAAAACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTAAGACAAGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCTGTGCGGCCCGCCACCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CATTCTGGAGAGCTGAGCTATGCCTGGATCTTCAATGAATACCCTTCCTATCAGGATAACCGCCGCTTCGTTTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCAAGAGACTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGATGTTGGTAATTACACCTGTGTAGTTACCA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACACTGTGACCAACCACAAGGTCCTGGGACCGCCCACACCACTAATCCTGAGAAATGATGGGGTGATGGGTGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TATGAGCCCAAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCTGAGAAAGGAACAACAGTCAAACTGGAATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGCCTTAGGAAATCCAGTCCCAACTATTCTATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAAAGCCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAGACATAAGTCGAATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAGATGCCGGTTCATATGAATGTGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTTTTTATGCTCAACCTAACTGGGTTCAAAT  962

Query    1  ----------------------ATGGAAGAAAATGTCTTTTGGGAATGTAAAGCAAATGGAAGGCCTAAGCCTA  52
                                  ||||||||.|.||||||.||||||||||||||||||||.||||||||.||||
Sbjct  963  AATAAATGATATCCACGTGGCCATGGAAGAGAGTGTCTTCTGGGAATGTAAAGCAAATGGGAGGCCTAAACCTA  1036

Query   53  CATACAAGTGGCTAAAAAATGGCGAACCTCTGCTAACTCGGGATAGAATTCAAATTGAGCAAGGAACACTCAAC  126
            |.||||..||||||||||||||.||.||.|||.||||.|||||||||||.|||||.||||||||||||||||||
Sbjct 1037  CCTACAGATGGCTAAAAAATGGTGACCCACTGTTAACACGGGATAGAATACAAATCGAGCAAGGAACACTCAAC  1110

Query  127  ATAACAATAGTGAACCTCTCAGATGCTGGCATGTATCAGTGTTTGGCAGAGAATAAACATGGAGTTATCTTTTC  200
            ||||||||||||||.||||||||||||||||||||.||||||.|||||||.|||||||||||||||||||||||
Sbjct 1111  ATAACAATAGTGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGGCAGAAAATAAACATGGAGTTATCTTTTC  1184

Query  201  CAACGCAGAGCTTAGTGTTATAGCTGTAGGTCCAGATTTTTCAAGAACACTCTTGAAAAGAGTAACTCTTGTCA  274
            ||.|||.|||||||||||.|||||||.|.|||||||||||||..||||||||||.|||||||||||.|||||||
Sbjct 1185  CAGCGCTGAGCTTAGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACACTCTTAAAAAGAGTAACACTTGTCA  1258

Query  275  AAGTGGGAGGTGAAGTTGTCATTGAGTGTAAGCCAAAAGCGTCTCCAAAACCTGTTTACACCTGGAAGAAA-GG  347
            ||||||||||||||||||||||||||||.|||||||||||.||.||||.||||||.||||||||| ||||| ||
Sbjct 1259  AAGTGGGAGGTGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCTGG-AGAAAGGG  1331

Query  348  AAGGGATATATTAAAAGAAAATGAAAGAATTACCATTTCTGAAGATGGAAACCTCAGAATCATCAACGTTACTA  421
            |||.||.|||||||.|||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||||
Sbjct 1332  AAGAGAAATATTAAGAGAAAATGAAAGAATTACCATTTCTGAAGATGGGAACCTCAGAATCATCAATGTGACTA  1405

Query  422  AATCAGACGCTGGGAGTTATACCTGTATAGCCACTAACCATTTTGGAACTGCTAGCAGTACTGGAAACTTGGTA  495
            ||||.||.|||||.|||||.|||||.||||||||.|||||||||||||||||.|||||||||||.||..||.|.
Sbjct 1406  AATCTGATGCTGGAAGTTACACCTGCATAGCCACGAACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGATT  1479

Query  496  GTGAAAGATCCAACAAGGGTAATGGTACCCCCTTCCAGTATGGATGTCACTGTTGGAGAGAGTATTGTTTTACC  569
            ||||||||.|||||||.|||.|||||.||.||||||||.||||||||||||||.|||||.||.||||||.|.||
Sbjct 1480  GTGAAAGACCCAACAAAGGTGATGGTTCCTCCTTCCAGCATGGATGTCACTGTAGGAGAAAGCATTGTTCTTCC  1553

Query  570  GTGCCAGGTAACGCATGATCACTCGCTAGACATCGTGTTTACTTGGTCATTTAATGGACACCTGATAGACTTTG  643
            .|||||||||||.|||||||||||.||.|||||.||||||||.|||.||||||||||||||.||||||||||||
Sbjct 1554  ATGCCAGGTAACACATGATCACTCCCTGGACATTGTGTTTACGTGGACATTTAATGGACACTTGATAGACTTTG  1627

Query  644  ACAGAGATGGGGACCACTTTGAAAGAGTTGGAGG---GGATTCAGCTGGTGATTTGATGATCCGAAACATCCAA  714
            |||..|||||.|||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct 1628  ACAAGGATGGAGACCACTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATGATCCGAAACATCCAA  1701

Query  715  CTGAAGCATGCTGGGAAATATGTCTGCATGGTCCAAACAAGTGTGGACAGGCTATCTGCTGCTGCAGACCTGAT  788
            |||||||||||||||||.||||||||||||||||||||||||||.||||..||.||||.||||||.||||||||
Sbjct 1702  CTGAAGCATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGCGGACCTGAT  1775

Query  789  TGTAAGAGGTCCTCCAGGTCCCCCAGAGGCTGTGACAATAGACGAAATCACAGATACCACTGCTCAGCTCTCCT  862
            |||||||||||||||||||||.||.|||||||||||.|||||.|||||||||||.||||||||||||||.||.|
Sbjct 1776  TGTAAGAGGTCCTCCAGGTCCTCCTGAGGCTGTGACCATAGATGAAATCACAGACACCACTGCTCAGCTTTCTT  1849

Query  863  GGAGACCCGGGCCTGACAATCACAGCCCCATCACCATGTATGTCATTCAAGCCAGGACTCCGTTCTCCGTGGGC  936
            |||||||.||.||||||||.|||||||||||||||||||||||.||.|||||.||||||||.||||||||||||
Sbjct 1850  GGAGACCAGGACCTGACAACCACAGCCCCATCACCATGTATGTTATCCAAGCTAGGACTCCATTCTCCGTGGGC  1923

Query  937  TGGCAAGCAGTCAGTACAGTCCCAGAACTCATTGATGGGAAGACATTCACAGCGACCGTGGTGGGTTTGAACCC  1010
            |||||||||||||.||||||.|||||.|||.|.||.|||||||||||||||||.||.||||||||||||||.||
Sbjct 1924  TGGCAAGCAGTCAATACAGTTCCAGATCTCGTCGACGGGAAGACATTCACAGCAACTGTGGTGGGTTTGAATCC  1997

Query 1011  TTGGGTTGAATATGAATTCCGCACAGTTGCAGCCAACGTGATTGGGATTGGGGAGCCCAGCCGCCCCTCAGAGA  1084
            ||||||||||||||||||||||||.||||||||.||.||||||||.||||||||.||||||||.||||||||||
Sbjct 1998  TTGGGTTGAATATGAATTCCGCACTGTTGCAGCTAATGTGATTGGCATTGGGGAACCCAGCCGGCCCTCAGAGA  2071

Query 1085  AACGGAGAACAGAAGAAGCTCTCCCCGAAGTCACACCAGCGAATGTCAGTGGTGGCGGAGGCAGCAAATCTGAA  1158
            |||||||.||||||||.||||||||.||||||||.||.||.||.|||||||||||.||||||||||||||||||
Sbjct 2072  AACGGAGGACAGAAGAGGCTCTCCCTGAAGTCACCCCGGCTAACGTCAGTGGTGGTGGAGGCAGCAAATCTGAA  2145

Query 1159  CTGGTTATAACCTGGGAGACGGTCCCTGAGGAATTACAGAATGGTCGTGGCTTTGGTTATGTGGTGGCCTTCCG  1232
            ||||||||||||||||||||.|||||||||||||||||||||||..|.|||||||||||.|||||.||||||||
Sbjct 2146  CTGGTTATAACCTGGGAGACAGTCCCTGAGGAATTACAGAATGGCAGAGGCTTTGGTTACGTGGTTGCCTTCCG  2219

Query 1233  GCCCTACGGTAAAATGATCTGGATGCTGACAGTGCTGGCCTCAGCTGACGCCTCTAGATACGTGTTCAGGAATG  1306
            |||..|.||.||||||||||||||||||||.||||||||.||||||||.|||||.|||||||||||||||||||
Sbjct 2220  GCCACATGGCAAAATGATCTGGATGCTGACCGTGCTGGCTTCAGCTGATGCCTCCAGATACGTGTTCAGGAATG  2293

Query 1307  AGAGCGTGCACCCCTTCTCTCCCTTTGAGGTTAAAGTAGGTGTCTTCAACAACAAAGGAGAAGGCCCTTTCAGT  1380
            ||||.||||..||.|||||||||||||||||||||||.|||||||||||.||||||||.|||||||||||||||
Sbjct 2294  AGAGTGTGCGTCCATTCTCTCCCTTTGAGGTTAAAGTGGGTGTCTTCAATAACAAAGGGGAAGGCCCTTTCAGT  2367

Query 1381  CCCACCACGGTGGTGTATTCTGCAGAAGAAGAACCCACCAAACCACCAGCCAGTATCTTTGCCAGAAGTCTTTC  1454
            |||||||||.|||||||||||||.|||||||||||||||||.|||||||||||||||||||||||.||||||||
Sbjct 2368  CCCACCACGCTGGTGTATTCTGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTATCTTTGCCAGGAGTCTTTC  2441

Query 1455  TGCCACAGATATTGAAGTTTTCTGGGCCTCCCC-ACTGGAGAAGAATAGAGGACGAATACAAGGTTATGAGGTT  1527
            ||||||.|||||.|||||||||||||||||||| |.|||| |||||.||||||||.||.||||||||||||||.
Sbjct 2442  TGCCACGGATATCGAAGTTTTCTGGGCCTCCCCTATTGGA-AAGAACAGAGGACGGATTCAAGGTTATGAGGTA  2514

Query 1528  AAATATTGGAGACATGAAGACAAAGAAGAAAATGCTAGAAAAATACGAACAGTTGGAAATCAGACATCAACAAA  1601
            |||||||||||||||||.|||||.|||||||||||||.|||.||||||||||||||||||||||||||.|||||
Sbjct 2515  AAATATTGGAGACATGATGACAAGGAAGAAAATGCTAAAAAGATACGAACAGTTGGAAATCAGACATCCACAAA  2588

Query 1602  AATCACGAACTTAAAAGGCAGTGTGCTGTATCACTTAGCTGTCAAGGCATATAATTCTGCTGGGACAGGCCCCT  1675
            ||||||.|||||.|||||.||||..||||||||||||.||||||||||.|||||.||.|||||||||||.||||
Sbjct 2589  AATCACCAACTTGAAAGGAAGTGCTCTGTATCACTTATCTGTCAAGGCGTATAACTCAGCTGGGACAGGACCCT  2662

Query 1676  CTAGTGCAACAGTCAATGTGACAACCCGAAAGCCACCACCAAGTCAACCCCCCGGAAACATCATATGGAATTCA  1749
            |.|||||||||||||||||.||.|||.||||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct 2663  CCAGTGCAACAGTCAATGTCACGACCAGAAAGCCACCACCAAGCCAACCCCCTGGAAACATCATATGGAATTCA  2736

Query 1750  TCAGACTCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGATAATGAGTCGGAAGTAAAAGGATACAA  1823
            ||.||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2737  TCGGACTCCAAAATTATCCTGAACTGGGATCAAGTGAAGGCCCTGGATAATGAGTCAGAAGTAAAAGGATACAA  2810

Query 1824  AGTCTTGTACAGATGGAACAGACAAAGCAGCACATCTGTCATTGAAACAAATAAAACATCGGTGGAGCTTTCTT  1897
            |||||||||||||||||||||.||||||||||||||||||||||||||.||.||.|||||.|||||||||||.|
Sbjct 2811  AGTCTTGTACAGATGGAACAGGCAAAGCAGCACATCTGTCATTGAAACCAACAAGACATCAGTGGAGCTTTCAT  2884

Query 1898  TGCCTTTCGATGAAGATTATATAATAGAAATTAAGCCATTCAGCGACGGAGGAGATGGCAGCAGCAGTGAACAA  1971
            |.|||||||||||||||||.||.|||||.||.|||||||||||.||.|||||||||||||||||||||||.|||
Sbjct 2885  TACCTTTCGATGAAGATTACATCATAGAGATCAAGCCATTCAGTGATGGAGGAGATGGCAGCAGCAGTGAGCAA  2958

Query 1972  ATTCGAATTCCAAAGATATCAAATGCCTACGCGAGAGGATCTGGGGCTTCCACTTCGAATGCATGTACGCTGTC  2045
            ||.|||||.|||||||||||||||.||||.||.||||||||.||||||||.||.||.|||||.|||||||||||
Sbjct 2959  ATCCGAATCCCAAAGATATCAAATTCCTATGCAAGAGGATCGGGGGCTTCTACCTCCAATGCGTGTACGCTGTC  3032

Query 2046  AGCCATCAGTACAATAATGATTTCCCTCACAGCTAGGTCCAGTTTA  2091
            ||||||||||||||||||||||||.||||||||.|||||.||||||
Sbjct 3033  AGCCATCAGTACAATAATGATTTCTCTCACAGCCAGGTCTAGTTTA  3078

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