Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13592
Subject:
XM_017313627.1
Aligned Length:
1554
Identities:
789
Gaps:
660

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTGGACCAGCTAAACACCAGCCCAGGAGACAGTGGCCAGAAGGAGATGACCCCTGGTAAGAAGATCCCCAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTTGTGGATGGGGTTGTACTTAATGGACCTCAAACAGATGTGAAAGCTGGAGAAAAATTTGTTGAAGAAGCCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTAGGCTCATAATGGAAGAGGTGGTTTTGAAAGCTACGGACGTCAATGAAAAGGTATGTGAGTGGCAGCCCCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGCAGCTGAGGCAGCTCCTTGACCTGGAGATGAGGGACACAGGCGAGTCACAGGACAAGCTGCTGAAACTCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCAAGACGTCATCCACTTCAGCGTCAAAACCAACCATCCAAGATTTTTCAACCAGCTCTATGCTGGCCTTGATT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACTACTCCTTGGCGGCCCGGATTATAACAGAGGCGCTGAATCCAAGCATTTATACGTATGAGGTGTCCCCAGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTTCTGTTAGTGGAAGAGGCGGTTCTGAAGAAAATGATTGAATGTGTTGGCTGGAAAGAAGGGGATGGAATATT  518

Query    1  -------------------------ATGTATGCAATGAATTTAGCTAGATACAAATATTGTCCTGATATTAAGG  49
                                     ||||.|||||||||||||||||||||||.|.||||.||||||||.||.|
Sbjct  519  TAACCCAGGTGGCTCAGTGTCCAATATGTGTGCAATGAATTTAGCTAGATACAGACATTGCCCTGATATCAAAG  592

Query   50  AAAAGGGGCTGTCTGGTTCGCCAAGATTAATCCTTTTCACATCTGCAGAGTGTCATTACTCTATGAAGAAGGCA  123
            |.||.||.||||||||||.||||||||||||||||||||||||.||||||||.||||||||.||||||||.||.
Sbjct  593  AGAAAGGCCTGTCTGGTTTGCCAAGATTAATCCTTTTCACATCGGCAGAGTGCCATTACTCCATGAAGAAAGCG  666

Query  124  GCCTCTTTTCTTGGGATTGGCACTGAGAATGTTTGCTTTGTGGAAACAGATGGAAGAGGTAAAATGATACCTGA  197
            |||||.||.|||||||||||||||.||||.||.|.||||||.|||||||||||||||||.|||||||||||.||
Sbjct  667  GCCTCCTTCCTTGGGATTGGCACTCAGAACGTGTACTTTGTAGAAACAGATGGAAGAGGAAAAATGATACCGGA  740

Query  198  GGAACTGGAGAAGCAAGTCTGGCAAGCCAGAAAAGAGGGGGCAGCACCGTTTCTTGTCTGTGCCACTTCTGGTA  271
            |||.|||||.||.|||.|.||||||||.|||.|||||                                     
Sbjct  741  GGATCTGGAAAAACAAATTTGGCAAGCGAGACAAGAG-------------------------------------  777

Query  272  CAACTGTGTTGGGAGCTTTTGACCCTCTGGATGAAATAGCAGACATCTGCGAGAGGCACAGCCTCTGGCTTCAT  345
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query  346  GTAGATGCTTCTTGGGGTGGCTCAGCTTTGATGTCGAGGAAGCACCGCAAGCTTCTGCATGGCATCCACAGGGC  419
                  ||.||||||||.||||||||||||.||||.||.|||||||||..|||.||||||||||||||||||||
Sbjct  778  ------GCCTCTTGGGGCGGCTCAGCTTTGGTGTCAAGAAAGCACCGCCGGCTCCTGCATGGCATCCACAGGGC  845

Query  420  TGACTCTGTGGCCTGGAACCCACACAAGATGCTGATGGCTGGGATCCAGTGCTGTGCTCTCCTTGTGAAAGACA  493
            ||||||.||||||||||||||||||||||||||||||||.||.||||||||||.||||||.|||||.||.||||
Sbjct  846  TGACTCAGTGGCCTGGAACCCACACAAGATGCTGATGGCGGGAATCCAGTGCTCTGCTCTACTTGTCAAGGACA  919

Query  494  AATCTGATCTTCTTAAAAAATGCTACTCTGCCAAGGCATCTTACCTCTTCCAGCAGGATAAATTCTATGATGTG  567
            ||||||||||||||||.||.||||||||||||||.|||.|.|||||.||||||||||||||||||||||||||.
Sbjct  920  AATCTGATCTTCTTAAGAAGTGCTACTCTGCCAAAGCAACGTACCTGTTCCAGCAGGATAAATTCTATGATGTC  993

Query  568  AGCTATGACACAGGAGACAAGTCTATCCAGTGTAGCAGAAGACCAGATGCATTCAAGTTCTGGATGACCTGGAA  641
            |||||||||||.|||||||||||.||.|||||.|||||.||.||.|||||||||||||||||||||||||||||
Sbjct  994  AGCTATGACACCGGAGACAAGTCCATTCAGTGCAGCAGGAGGCCTGATGCATTCAAGTTCTGGATGACCTGGAA  1067

Query  642  GGCCCTGGGTACATTAGGCCTTGAAGAAAGAGTTAATCGTGCTCTTGCTTTATCTAGGTACCTAGTAGATGAAA  715
            |||.|||||.||||.|||.||.||.||.|||||.||||||||..|||||.|||||.|||||||.|||||.||||
Sbjct 1068  GGCTCTGGGCACATCAGGACTCGAGGAGAGAGTAAATCGTGCCTTTGCTCTATCTCGGTACCTGGTAGACGAAA  1141

Query  716  TCAAGAAAAGAGAAGGATTCAAGTTACTGATGGAACCTGAATATGCCAATATTTGCTTTTGGTACATTCCACCG  789
            ||||||||||||||||.||||||.|.||||||||.|||||||||.|||||.|||||||||||||||||||||||
Sbjct 1142  TCAAGAAAAGAGAAGGCTTCAAGCTGCTGATGGAGCCTGAATATACCAATGTTTGCTTTTGGTACATTCCACCG  1215

Query  790  AGCCTCAGAGAGATGGAAGAAGGACCCGAGTTCTGGGCAAAACTTAATTTGGTGGCCCCAGCCATTAAGGAGAG  863
            ||.||||||||||||||.||||||||.|||||||||..|||.||||..|||||||||||||||||.|||||||.
Sbjct 1216  AGTCTCAGAGAGATGGAGGAAGGACCAGAGTTCTGGAGAAAGCTTAGCTTGGTGGCCCCAGCCATCAAGGAGAA  1289

Query  864  GATGATGAAGAAGGGAAGCTTGATGCTGGGCTACCAGCCGCACCGGGGAAAGGTCAACTTCTTCCGCCAGGTGG  937
            .|||||||||||||||||..|||||.|||||||||||||.||||||||.|||||||||||||||||||||||||
Sbjct 1290  AATGATGAAGAAGGGAAGTCTGATGTTGGGCTACCAGCCCCACCGGGGGAAGGTCAACTTCTTCCGCCAGGTGG  1363

Query  938  TGATCAGCCCTCAAGTGAGCCGGGAGGACATGGACTTCCTCCTGGATGAGATAGACTTACTGGGTAAAGACATG  1011
            |.|||||||||||||||||||||||.||||||||||||||.|||||||||||||||...|||||.|.|||.|||
Sbjct 1364  TCATCAGCCCTCAAGTGAGCCGGGAAGACATGGACTTCCTGCTGGATGAGATAGACAGCCTGGGGAGAGATATG  1437

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.