Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13621
Subject:
XR_001740141.2
Aligned Length:
2086
Identities:
1321
Gaps:
765

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTGGAGACGTAAACCCAAGAGCCCTGCTCCTGGAGCTGAGAACTGCAGCGCGGAGGCTTCGGAGCGAGCCGGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGTCGGGGTCGAGGCAGCCCCTCCTGACTGTGACTTTGGACACCTCGCTGAATCTCTGCTTCCTCCCCTGCAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAATGAAAATTCATTCAATGGATGAAGTTAAGAAGTGCCAAGGGTGAGGATCTCCTTTAGAAGAGGAGAAGCCT  222

Query    1  ----------------------------ATGTCTGAGATACCGTCCACTATAGTCTCCAAGAACATGACCAATG  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGCATCAACCTCTTGGGCCTCAGCCAAGATGTCTGAGATACCGTCCACTATAGTCTCCAAGAACATGACCAATG  296

Query   47  ACAAGAACAGCCTGGAATCCATGAACATCAGCTCTTCTTCAAGCACTGAAGAGAACCCAAAGAAACAGGCAAGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACAAGAACAGCCTGGAATCCATGAACATCAGCTCTTCTTCAAGCACTGAAGAGAACCCAAAGAAACAGGCAAGA  370

Query  121  AAAAACGAAGAACATGGTCCTGACCCTTCAGCGAACCCTTTCCACTTATCTGGGGATGTGGATTTCTTCTTGCT  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAAAACGAAGAACATGGTCCTGACCCTTCAGCGAACCCTTTCCACTTATCTGGGGATGTGGATTTCTTCTTGCT  444

Query  195  CAGAGATCAGGAGCGGAATAAGGCTCTCTCCGAACGGCAGCAGCAGAAGACGATGCGGGTGCACCAGAAGATGA  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAGAGATCAGGAGCGGAATAAGGCTCTCTCCGAACGGCAGCAGCAGAAGACGATGCGGGTGCACCAGAAGATGA  518

Query  269  CCTACTCCTCGAAAGTGTCGGCTAAGCACACCAGCCTGCGGCGGCAGCTGCAGCTGGAGGACAAGCAGGAGGAC  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCTACTCCTCGAAAGTGTCGGCTAAGCACACCAGCCTGCGGCGGCAGCTGCAGCTGGAGGACAAGCAGGAGGAC  592

Query  343  CTGGAGGCGCGCGCCGAGGCCGAGCATCAGCGCGCCTTCCGCGACTACACGACCTGGAAGCTCACCTTGACCAA  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTGGAGGCGCGCGCCGAGGCCGAGCATCAGCGCGCCTTCCGCGACTACACGACCTGGAAGCTCACCTTGACCAA  666

Query  417  AGCAGAAAAGAATGTGGAGCCTGAGAACATGAGTGGCTACATTAAGCAGAAGCGGCAAATGTTCCTCCTCCAGT  490
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ---AGAAAAGAATGTGGAGCCTGAGAACATGAGTGGCTACATTAAGCAGAAGCGGCAAATGTTCCTCCTCCAGT  737

Query  491  ATGCCCTGGATGTCAAGCGGAGAGAGATCCAGCGGCTGGAGACGCTGGCGACCAAAGAGGAGGCCAGGCTGGAG  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  ATGCCCTGGATGTCAAGCGGAGAGAGATCCAGCGGCTGGAGACGCTGGCGACCAAAGAGGAGGCCAGGCTGGAG  811

Query  565  CGGGCCGAGAAATCCCTGGAGAAGGACGCCGCCTTGTTCGACGAGTTCGTCAGGGAGAATGACTGCAGCTCCGT  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  CGGGCCGAGAAATCCCTGGAGAAGGACGCCGCCTTGTTCGACGAGTTCGTCAGGGAGAATGACTGCAGCTCCGT  885

Query  639  GCAGGCCATGAGAGCGGCTGAGAAGGAGACCAAAGCCAAGATAGAGAAGATCCTTGAGATCCGGGACCTCACCA  712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  886  GCAGGCCATGAGAGCGGCTGAGAAGGAGACCAAAGCCAAGATAGAGAAGATCCTTGAGATCCGGGACCTCACCA  959

Query  713  CCCAGATTGTTAATATCAAAAGTGAGATCTCCAGATTTGAAGACACTCTGAAGCATTACAAGGTCTATAAGGAT  786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  CCCAGATTGTTAATATCAAAAGTGAGATCTCCAGATTTGAAGACACTCTGAAGCATTACAAGGTCTATAAGGAT  1033

Query  787  TTCCTATACAAGCTGTCGCCCAAGGAGTGGCTTGAAGAACAGGAAAAGAAACACTCGTTTCTCAAAAAGGCCAA  860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  TTCCTATACAAGCTGTCGCCCAAGGAGTGGCTTGAAGAACAGGAAAAGAAACACTCGTTTCTCAAAAAGGCCAA  1107

Query  861  GGAGGTCTCCGAGGCTTCCAAAGAGAGCAGTGTTAACTCCACACCAGGGGACAAAGGACCAGGGATCAAGGGCA  934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108  GGAGGTCTCCGAGGCTTCCAAAGAGAGCAGTGTTAACTCCACACCAGGGGACAAAGGACCAGGGATCAAGGGCA  1181

Query  935  AGGCGAGCTCCATGTGGGCCAAAGAGGGTCAGGGTACAAAGAAGCCCTGGAGGTTTCTGCAGACGATGCGGCTG  1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  AGGCGAGCTCCATGTGGGCCAAAGAGGGTCAGGGTACAAAGAAGCCCTGGAGGTTTCTGCAGACGATGCGGCTG  1255

Query 1009  GGGCGGAGCCCGTCTTACCTGAGCAGCCCCCAGCAAGGCAGCCAGCCCAGCGAGTCCAGCGGTGGCGACTCCAG  1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  GGGCGGAGCCCGTCTTACCTGAGCAGCCCCCAGCAAGGCAGCCAGCCCAGCGAGTCCAGCGGTGGCGACTCCAG  1329

Query 1083  AGGGTCGAACTCTCCCATCCCCCCCACGCAGGAGGACACCGACAGCGATGGGGAGGAACCACAGCTGTACTTCA  1156
            ||                                                    ||||||||||||||||||||
Sbjct 1330  AG----------------------------------------------------GGAACCACAGCTGTACTTCA  1351

Query 1157  CGGAGCCCCAGCAGCTCCTGGATGTCTTCCGAGAGCTGGAGGAGCAGAACCTGTCGCTGATCCAGAACAGCCAG  1230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352  CGGAGCCCCAGCAGCTCCTGGATGTCTTCCGAGAGCTGGAGGAGCAGAACCTGTCGCTGATCCAGAACAGCCAG  1425

Query 1231  GAGACGGAGAAGACCCTGGAGGAGCTGAGCCACACCCTGAAACACACCCAGATCCGCATGGACAGGGAGGTCAA  1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426  GAGACGGAGAAGACCCTGGAGGAGCTGAGCCACACCCTGAAACACACCCAGATCCGCATGGACAGGGAGGTCAA  1499

Query 1305  CCAGCTGAAGCAGTGGGTCACCACAATGATGATGTCCATCACCAAGGAGGAGGACACAGCAGCTGAGCTGGAGC  1378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 1500  CCAGCTGAAGCAGTGGGTCACCACAATGATGATGTCCATCACCAAGGAGGAGGACACAGCAGCTGAGCTGGA--  1571

Query 1379  TCAAAGCCCGAGTCTTCCACTTCGGCGAGTACAAGGGCGATCAGCAGGATAAGCTGCTAGAGAGCCTGAACTGC  1452
                                                                                      
Sbjct 1572  --------------------------------------------------------------------------  1571

Query 1453  AAGGTGCTGGATGTGTACCGGCACTGCACCGGCACCCAGCAGGAGGCCAACCTGGGCACCGTGCAGATGCTGAC  1526
                                                                                      
Sbjct 1572  --------------------------------------------------------------------------  1571

Query 1527  CATCATTGAGCACCAGCTGGATGAGCTGCTAGAGAACCTGGAGCACGTGCCCCAGGTCAAGATCGAGCAGGCCG  1600
                                                                                      
Sbjct 1572  --------------------------------------------------------------------------  1571

Query 1601  AGAGGGCAAAGGAGAAGGAGCGGCGCATCAGACTTCGAGAAGAGAAGCTCCAGATGCAAAAGATCCTACAGGAG  1674
                                                                                      
Sbjct 1572  --------------------------------------------------------------------------  1571

Query 1675  GAGCATCTGCAGCGGGCCCGGGCGCGCGCCCAGGCTGAGATCAAGAAGAAGAGAGGCAGGACACTGGTATGCCG  1748
                                                                                      
Sbjct 1572  --------------------------------------------------------------------------  1571

Query 1749  CTCACGACCCCCAGCCCACAGGATCAAACAACAGTCTGAGCACACACTGATGGACAAGGAGGAGGAGGAGCTGC  1822
                                                                                      
Sbjct 1572  --------------------------------------------------------------------------  1571

Query 1823  TATTTTTCTTTACT  1836
                          
Sbjct 1572  --------------  1571

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