Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13646
Subject:
NR_023311.1
Aligned Length:
2484
Identities:
199
Gaps:
2259

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGGAGAGAACCTTACACATTTCACGAGTATGGAAAGACCTTTGCTCAAAATTCAGCCCTTGTAATGCATAAGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATTCATACTGGAAAGAAACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTAGAAAAGCACACCTTGCAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCATCATAGACTTCATACTGTCTAAGGTTTCTAATCAACAATCAAACCTTGCACAACATCAGAGAGTTTATAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGAGAGAAACCTTACAAGTGTAATGAGTGGGGCAAAGCCTTAAGTGGGAAGTCGTCACTTTTTTATCATCAAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAATCCATGGTGTAGGGAAACTTTGCAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AATCACTGGAGAATCCATAATGAAGACAGATCTTACAAGTGTAATAAATGTGGTAAAATTTTCAGACATCGATC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATATCTTGCAGTTTATCAGCGAACTCATACTGGAGAGAAACCTTACAAATATCATGACTGTGGCAAGGTCTTCA  518

Query    1  ---------------------------------------------------------------ATGATTGTGGC  11
                                                                           |||||||||||
Sbjct  519  GTCAAGCTTCATCCTATGCAAAACATAGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGC  592

Query   12  AAAGCCTTTACTTCACATTCACACCTCGTTGGACATCAGAGAATCCATACTGGACAGAAATCTTGCAAATGTCA  85
            ||||.|||.|||||||.||||||||||.||.|||||||||||||||||||||||||||||||||.||||||||.
Sbjct  593  AAAGTCTTGACTTCACGTTCACACCTCATTAGACATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCT  666

Query   86  TCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCTTGCAGAACATGAGAAAATTCATTTTTGAGATAACTGTT  159
            |.|||||||||||||||||||||.|.||.||||||.||||||||||.|||||||||||||||||||||||||||
Sbjct  667  TAAGTGTGGCAAGGTCTTCAGTCTGTGGGCACTCCATGCAGAACATCAGAAAATTCATTTTTGAGATAACTGTT  740

Query  160  CCCAATGCAGTGAGTATAGCAAACCATCAAGCATTAATTGACATTGGAGTCAATTCAGCATTGACT--------  225
            ||.|||.||||||.|||||.|.|.|||.||||.||||||||||||.|||.|||.|..|||||||||        
Sbjct  741  CCAAATACAGTGACTATAGAAGATCATAAAGCTTTAATTGACATTAGAGCCAAATAGGCATTGACTTGAGATTG  814

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct  815  AGTTGACTTAACCTTGAGTTTAAGAATTAATTTACATTAAAGTGTTTATGTTAAGAAGATTGGGCCAGGTGGGA  888

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct  889  TTACAGGCGCGAGCCACCGCGCCCGGCCCCTAAGTTAATATTTCAAACAATCGAAGGTAAAACAACATATTGTG  962

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct  963  TTGGGCCACCTGTACTGAACGCTGAATCGTTTTTCCTCTTAAGTTGAAAATGGTTTTAATGCAAAGCGCCTTTT  1036

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1037  TTGAGCAGGTAGAGTCACGCATCCGGCAGGCGGGGCGAGCTCCCCTCTGTCTGGGGCAGGGTGGGGGAGAGGGG  1110

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1111  CAGGGACCTCGGTAAAGGGGTGGAGTGGCGCGCTGGTTGCCGCGGGCACTGGCAATTAGAAGGGATTATTAAAC  1184

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1185  TAAGCAAGGTCCTGGGTTGTTTGAGTGGATAATGGAAACTGAAAGGTGACGTGCAAAACTGCCTATTACTCCCA  1258

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1259  GGAGTGGAGGATAATTTCATATTTCATGGAAATAAACTCAGGGCCCGGAGCGGTGGCTCACACCTGTAATCCCA  1332

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1333  GCACTTTGAGAGGCCAAGGAGGGAGGATCGCTTAAGCCCAGGAATTCGAAATCAGCCTAGGCAACATAGTAAGA  1406

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1407  CCTCATCTCTACTAAAAATAAAAAAAAACAGCCAGGTGTGTTAGTCCACACCTGTGGTCCCAGCTGCTTGGGCT  1480

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1481  TCCCGAGTAGCTGGGATTACAGGTATGAACCACTATGCCCGGCTAACTTTGTTTTTTTTTTTTAGAAATTAAAC  1554

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1555  CTTTTTTCAGCTTAATGACCCAGGGGTGTATTTTTGAAGGACTTGGGAGCTCTCTTTGAAAGGCAAACAACAAG  1628

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1629  GGAAACAGTACCTTTATCTCAGTAGGAAATTAAATAATTCAAACATCAAATAACTTCAATTTAAGGCTATGGAC  1702

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1703  TTTGAGATAATTCTGAGCCTTGAGAGGAATGTGGTCAGGCAACCTGAGTCCAGTGGAATGCAGGTGCAACTTCT  1776

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1777  AAGAGTTTTCCTGTAAGTAATTAAGAAGACTAAGTAGCCCCAGAGATAAGACCTCCTCGGATCATTGTCCCTTC  1850

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1851  TTATGTAGTGATAAAGTAACCTTCCTTGAAGTGTATCTATCCGTAATCAATCAAGTTGCTGCAGCCTATGCACT  1924

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1925  GGCCCAGAATAAAAAACGTGGTGATTCTGCTAAAGCTTCTCTGTCTTTCCCTGTGTGTGAAATCTTAACGTCTC  1998

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 1999  TACTTGGGAACGCTGATCCCATTCATTTAGAGTTGATGTTTCCACGTGGCTATTTCCAAGCTTTGCCTTCAAAT  2072

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2073  AAATTCTGTACTTAATCATATATTCTAAATTTTATTATTTACTGCTGACATCAGTTTCTGTCGGATTGTAGGAG  2146

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2147  CCTCACCAGAGAGGGCCCCTGTCGCCATGTTGTAAAACTCACACTTGCCAAAAGTTGTGGGTTAGGGTTTCTCC  2220

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2221  CCCTCCCTCAGGATGACGCTAGTTAGCTGACACAGATGGTCACCTCCATTACCAAGTAGAGTCAGGATGAACTA  2294

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2295  TGTGTGACTGTTCAACTATGTGTCCTCTTCCCTGAGGACTGATTAGTGTTTATCTTGAAAACATGTCCTTAATG  2368

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2369  GGTTGTATAGAACACTGAAGCATCTGATTTCAAACTCTTAGCTCTTTTCCTCTATTTCCCATCACATTCTGGTC  2442

Query  226  ------------------------------------------  225
                                                      
Sbjct 2443  TAAGGCTTATTTATTAATAAAATGATTTTTATTTCTTTATTA  2484

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.