Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13646
Subject:
XR_001753616.2
Aligned Length:
2720
Identities:
201
Gaps:
2495

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGAGTTTCGCTCTGTTTTATGTGTGCTTCCCAGTCCTGTGGTGCTGCTATACCGGGGACGTTGAGTCCCCACAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCTGGAAATTGCGGCCCCTCTTTCTCAACCCAGAGCAAATTGAGACGTCCGGTTGTATCTTAATTCAGTGAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTCCAACTTTTTGGGGGGTGGAGGTGATGGAGTTTCGCTGTGTCCCCCAGGCTGGAGGGCAGTTGTGCGATCTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GATTCACTTCAACCTCTGCTCTCCGGGCTCAAGCAATTCTCCCACCTCAGCCTGAGTCTCACTCTGTCCTTCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCTGTGAGTGCAGTCTCCTGATCTTGGCTCACTGCAACCTCTGTCTCCTGGGTTCAAGTGATTCTTGTGCCTCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCTACCAAGTAGCTGAGATACAGGATTGACTTCTAAAGACTCTTGGTACCTGAGGAAGAAACCCAGAAGAGGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGAGGAAAGCAAAGGAGTCGGGGATGGCTCTTTCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAGGCAATACAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAGGAAATTGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCATGACAGAAAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AATCAAGATTTCATTTGCATTTGCGAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACCATACAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATGTAAGGTTTGCGACAAGGCTTTTAAGCATGATTCACACCTGGCAAAACATACTAGAATTCACAGGGGAGACA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AACATTACACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCATAGAAGTCAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCACACCTTGTGTACCATCA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATTCAGTCCTCG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTTAAGCAACGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGACAAAGTTTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAGACCTTACACATGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AATGAATGTGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATCAAAAACTTCATACTGGAGAGAAACT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATACAG  1776

Query    1  ---------------------ATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGACATCAGAGA  53
                                 .|||||||||.||||||||||.|||||.|||||||||..||.|.|||||||||
Sbjct 1777  GAGAGAAACCTCACAAGTGTGGTGATTGTGGTAAAGCCTTTAATTCACCTTCACACCTTATTAGGCATCAGAGA  1850

Query   54  ATCCATACTGGACAGAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCTTGCAGA  127
            ||||||||||||||||||||||.|||||||||||||||||||||||||||.||||.||||||||||||||||||
Sbjct 1851  ATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAGGTCACTCCTTGCAGA  1924

Query  128  ACATGAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAGTGAGTATAGCAAACCATCAAGCATTAATTGAC  201
            ||||.|||||||||.||||.||||.||.||||.|.|.||||.||||||||||||||||||||||||||||||||
Sbjct 1925  ACATCAGAAAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAAACCATCAAGCATTAATTGAC  1998

Query  202  ATTGGAGTCAATTCAGCATTGACT--------------------------------------------------  225
            ||..|||||||.|||||||||||.                                                  
Sbjct 1999  ATCAGAGTCAAATCAGCATTGACCTGAGTTTGAGTTGACTTAACATTGATTTCAAGCATTAATCGACATTAAAC  2072

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2073  TGTTTATGTTAAGAGGATTGGGCCAGGCGTGGTGTCTCACACCTGTAATCCCAGCACTTTGAGAGGCCAAGACA  2146

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2147  GATGGAATCTTGCTCTGTCGCCCACGTTGGAGTGCAGTGATGTGATCTCGGTTCACTGCAACATTCACCTCCCA  2220

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2221  GGTTCATGCAATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACTACAGGATTGATTTCCAGAGACTTATGTTA  2294

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2295  CTTGAGGAAGACACCAAGAAGGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAGGGATACTTGACTTTCAGA  2368

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2369  GATGTGGCTATAGAGTTCTCTTTGCTGGAGTGGAAACGCCTGGACCCTGCACAGAACGCTTTATACAGGGCTGT  2442

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2443  GATGTGGGAGAACTACAGGAACCTGGAGTCTGTGGGTGAGGAAAATGTTCCTCCAGACATGAAGAATCTGTCCT  2516

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2517  TGTGTATCTTGGCTTTTCCTGGTTTTGTATTCTCTTTTGTGATTTTGCCCCATACGTGCTTTTGATGTACACAG  2590

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2591  CTGGGATTCCAGGCACGTGCCACCATGCCCAGCATGTTATTTTGTATCTTTAGTGGAGATAGGGTTTTGCCATG  2664

Query  226  --------------------------------------------------------  225
                                                                    
Sbjct 2665  TTGGCCAGGCTCGTCTCGAACTCCTGACCTCCATACCCACCCGCCTCGGCCTCTAA  2720

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.