Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13646
Subject:
XR_935832.3
Aligned Length:
4228
Identities:
215
Gaps:
4003

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGATTAACGCAAACCCGGAAGCGGATCGGGTGGAGTGAAGGTCACGTCGCCATGGATTGATTTCTAAAGACTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGATATCTCTTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAACACATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATCAAAGTTATCACATTGGAGACTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTCAAGAAGATGAAAGAAATGGCCATGAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACTCCACATATTTCAGATCAAAGGTGAAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAACATCCCAAAGAATTTCCTGTAGGCCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TAATTGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCAAGCTCTTTAATCACAAGCAATACCTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAGAGTGTGGAAAGTCCTTCAGTTACAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTACAAGTGTAATGAGTGTGGCAAGGTCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTTCATACTGGAGTGAAACCTTACAAATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCATACTAGAATTCATAGTGGAGAGAAAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCTTGCACGTCATCATATACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAGAAATCAACCCTTGAGAGACATAAGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGCTTTCACGTGTAATTCACAGCTGGCACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTGTCGCAAGACCTTCAGCCGCAGGTCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AAGTGTAATCAGTGTGGCAATACCTTCCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAATCTTACAAATGTACGGTTTGTAACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ACACTGCAAAGAAACCTTACAAGTGTAATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGAGTCACATAAGAGAATTCATACTGGAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATTCACAGCTGGCACGACATACAAGAATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTCAGTTACAAGTCATCACTTGTATGGCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGACAAGGCTTTCGTGTGTCGTTCCTATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTAATGAGTGCAGCAAGACCTTCAGTAACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTTACAAGTGTAGTGAGTGCAGCAAGACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGTGAGAAACCTTACAAGTGTAACGACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GACTTCATACTGGAGAGAAATCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGACATATTAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAATGAACAATC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACACCTTTCACGTCATCATAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTCA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GTCGCAAATCACACCTTAAAAGACATAGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AAAGCCTTTAGTGACCGGTCAACACTTATTCACCATCAGGCAATTCATGGTATAGGGAAATTTGATTAATATAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGATTGTCACAAAGTCTTCAGTAACACTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAATCTT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTGAGTGTAATAAATGTGGCATGTTTTTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATACTGGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAGAAACCTTACAAATGTCATGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACAGGAGAATTC  2886

Query    1  ---------------------------ATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGACAT  47
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  ATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGACAT  2960

Query   48  CAGAGAATCCATACTGGACAGAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCT  121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  CAGAGAATCCATACTGGACAGAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCT  3034

Query  122  TGCAGAACATGAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAG----TGAGTA-----TA---------  177
            ||||||||||||||||||||||||||||||||||||||||||||||||    |.||||     ||         
Sbjct 3035  TGCAGAACATGAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTGGTATGCCTGGGA  3108

Query  178  -----------------------GCAAACCAT-CAAGCATTAATTG-----------ACAT---TGGAG--TCA  211
                                   |||||..|| |||..||||..||           ||||   ||.||  |||
Sbjct 3109  AACATGGTGAGACCCCCGTTTCTGCAAAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCAGTATCA  3182

Query  212  ----------ATTCAGCA-------------TTGA--CT-----------------------------------  225
                      |.||.|||             ||||  ||                                   
Sbjct 3183  ACTACTGTGGAGTCTGCAGTGGGAGGATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAATCATGCT  3256

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3257  ACTGCACTCCAGCATGGTTGACAGAGCAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGGTACAGG  3330

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3331  AATAATGAAGTCATTGATAGTTTATGAACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTGTAAATG  3404

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3405  AATAACTTATTTTGAGTTGTGACAAGACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCCACATCA  3478

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3479  GTTTTACAGAAAAAAAGTTAATCTTGTTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATAGTCAGG  3552

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3553  AATTCAATAATAGCCTGGTTAACATGATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGCACAGTG  3626

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3627  GTGGGCACCTGTAATCCCAGCTACTCAAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGAAGTTTC  3700

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3701  GATGAGCCGGGATCCTGCCGTTGCACTCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAACAAACAA  3774

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3775  AAAGGTCTAGCCCCCTCTCCTCCTTTGTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATGTCTTCT  3848

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3849  CACAAGACTTTCAGGATTAAGCGGTTTCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTGGATTCG  3922

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3923  AATGAAAACTGGCAATAAAATCAGGTCCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAG  3996

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3997  GAATTGCACGTGAGATGGCACACATATTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAAAATGTC  4070

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 4071  ACTACCATCTGGAGACTTGGACATGTTTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAACGCATT  4144

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 4145  GGTTGGGTGGGTTCAGTAATAAACATGTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAATAGATTA  4218

Query  226  ----------  225
                      
Sbjct 4219  CCTAAATTTC  4228

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