Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13723
Subject:
NM_027256.2
Aligned Length:
2922
Identities:
1148
Gaps:
1635

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGCAGGAGGAAATTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TACCAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGCAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATTATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAAGTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTTGCA  518

Query    1  ---------------------------------------------------ATG--CAGCGGCCGCTGAGGGTG  21
                                                               |.|  ||||.|||    ||.|..
Sbjct  519  ATTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCC----AGAGAT  588

Query   22  GCGCA----------GGGGCCCCGGCCAG-----------CCCGGGGCTG--CAGCAG---------------T  57
            |..||          ||||.||....|||           |.||||.|.|  ||||||               |
Sbjct  589  GTTCAGAAAATTATCGGGGACCACTTCAGTGACCAAGATCCACGGGTCAGAACAGCAGCTATAAAAGCCATGTT  662

Query   58  GCGGACAGCTCCA------------GAAGCT-CATC----------------GGCATCTCCATTG------GCA  96
            |    ||||||||            ||||.| ||.|                |||.|.|..||||      |..
Sbjct  663  G----CAGCTCCATGAAAGAGGACTGAAGTTACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTGAT  732

Query   97  GCCTGCGCGGGCTGGGCACCAAGTGCGCTGT------GTCCAAC--------GACCTCACCGAGCAGGAGATAC  156
            |.||.||          |.||.||||||.||      |||||.|        |...|||.|.|||        .
Sbjct  733  GACTACG----------AGCAGGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTTGTCAGCCAGC--------T  788

Query  157  GGACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAA  229
            ..|.|||| |||.||.||.|||||.||.|||||||||||||||||.||..|||||||||||||.||||||||||
Sbjct  789  CTATCCTGAGAGTATAGTTCCAATACCGTCTTCTAATGAAGAAATCCGTCTAGTTGATGATGCATTTGGAAAAA  862

Query  230  TTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAA  303
            ||||.||||||||||||||||||||.||||||||||.||||||.||.|||||.||.||||||||.|||||||||
Sbjct  863  TTTGCCACATGGTCAGTGATGGCTCCTGGGTGGTTCGTGTTCAAGCTGCAAAGCTATTGGGCTCGATGGAGCAA  936

Query  304  GTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACA  377
            ||.||.||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  937  GTTAGCTCTCATTTCTTGGAGCAGACTCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGCACTGCACA  1010

Query  378  TGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGG  451
            |||||||||||||||||||||||||||.||||||||||||||||||||.||.||||.|||||||||||||||||
Sbjct 1011  TGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGGAAATGGGGAGATGATGCTCCCAAGG  1084

Query  452  AAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGAT  525
            |||||.||||.||.|||||.||||||.||||.|||||||||||.||||||||.|||||||||||||||||||||
Sbjct 1085  AAGAAATAGACACGGGGGCCGTGAACCTGATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGAT  1158

Query  526  GAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGA  599
            |||||||||||||||||.|||||||||||||||||.||.||||||.|.|||||||||||.||||||||||||||
Sbjct 1159  GAGATGTATGAGGTTCGCATTGCTGCTGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGA  1232

Query  600  GAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCA  673
            .|||||||||||.||.|||||||||||||||||.|||||||||||||||||.|||||||||||||||||.||||
Sbjct 1233  AAAGTGCCTTGACTTTCTAGTTGACATGTTCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCA  1306

Query  674  TGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCA  747
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1307  TGAGAAAAATCTCTAACAATATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCA  1380

Query  748  GCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCT  821
            .||||.||||||.||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||
Sbjct 1381  TCCAGGGATATTAGAGAGGCTCTTCATGAACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCT  1454

Query  822  TGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGT  895
            ||||.||||||||||.||.|||||..|||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1455  TGCACTGGTGGAGCTTCTAAAAAACCTAACCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGT  1528

Query  896  TTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGAC  969
            |||||||.||.||||||||.|||||.||||||||..|||||||||||||..|||||||.||||||||||||||.
Sbjct 1529  TTCTGGGCAGCCGGCATCCGACCCTCGTGCTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGAT  1602

Query  970  ACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTG  1043
            ||.|||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||||||||||||||.|||||
Sbjct 1603  ACTGCTGAACCAGACATGGACGATCCAGCTTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTG  1676

Query 1044  TCCAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATC  1117
            |||.|||||||.||||.|.||||||||.||||||.||||||||||||||||||||||||||||.||||||||||
Sbjct 1677  TCCTACAATGCCAGCACTCTTCTCAGACCACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATC  1750

Query 1118  TTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCC----AGCATCATACCTCA  1187
            |||||||||||||||||||||||||.||||||||||||||.||..|||    ||||    |.|||||..|||||
Sbjct 1751  TTGTTCCTGCCTTGAGGTTACCAGGGAGAAAACTGGTGTCCTCCACTG----TCCCCTCTAACATCACCCCTCA  1820

Query 1188  AGAGGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGG  1261
            .||.||||||||.|||||||||||||||||||||||||||||.|||||||||.||||||||.|.||.|||||||
Sbjct 1821  TGAAGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCTCAGG  1894

Query 1262  GAGCCCAGGAGCTGCTGGAATTCACCATC---------------------------------------------  1290
            |.|||||.|||||||||||||||||||||                                             
Sbjct 1895  GGGCCCAAGAGCTGCTGGAATTCACCATCAGAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAATTGGCAGGA  1968

Query 1291  -------------------------------------------------AGGCCTTGCAGGAAAAGTCGTGGAA  1315
                                                             |||||||||||||||||..||||||
Sbjct 1969  GTAGCTGACTTCTCTGCCACCTATCTTCAGTGTCAACTGCTCCTCATTAAGGCCTTGCAGGAAAAGCTGTGGAA  2042

Query 1316  TG------------------------------------------------------------------------  1317
            ||                                                                        
Sbjct 2043  TGTGGCTGCCCCCTTGTATCTAAAGCAGAGTGATTTGGCCTCAGCAGCAGCAAAACAGATCATGGAGGAAACCT  2116

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2117  ACAAAATGGAGTTTATGTACAGTGGTGTGGAAAACAAGCAGGTTGTGATCATACAGCACATGAGGCTTCAGGCC  2190

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2191  AAAGCTCTGCAACTCATAGTAACTGCACGAACTACTCGAGGAGTAGACCCCTTATTTGGAATGTGTGAAAAATT  2264

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2265  TTTACAGGAAGTGGATTTTTTTCAGAGGTGTTTCATTGCGGATTTGCCCCACCTTCAAGATAGCTTTGTGGACA  2338

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2339  AACTCCTTGATCTTATGCCCCGACTCATGGCATCTAAACCTGTTGAAGTGATCAAAATTCTGCAGACAATGCTG  2412

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2413  CGGCAGAGCACCTTCTTACATCTTCCGCTTCCAGAGCAGATACACAAAGCCTCAGCCACCATTATTGAGCCGGC  2486

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2487  AGGAGAGTCAGACAATCCTTTGCGGTTTACATCTGGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAAC  2560

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2561  ATGTGCAAGACCCCCAGAACACTGTCAAGGTTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCC  2634

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2635  AAGCCAGCAGATTTCCGGAATCCTGGCCCAGGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGC  2708

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2709  CTGGACAGAACCATGCCAAGTGGAAGTGAGGCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTC  2782

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2783  CATGGCTGGAGGGTAGTGAGATGTCACCACAGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCT  2856

Query 1318  ------------------------------------  1317
                                                
Sbjct 2857  GTGAAAGTCTACATAATGCCCAAGCCTGCAAGACGC  2892

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.