Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13723
- Subject:
- NR_146905.1
- Aligned Length:
- 3199
- Identities:
- 1298
- Gaps:
- 1895
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGGGCGGGAGCGGCAGACTCCGCTGCCAGCTCTACTGGCGTCCTGGCAAGGGCAGCGCCGAGGGGCGCTCCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCCAGCTCTCCCGGCTCGGGGGTTCCTTGCCTAGGCGCCAGAGCCCCGGGCTCCCTGCCTCGGCCGCTGTGGC 148
Query 1 ----------------------------------------------------------------ATGCAGCGGC 10
||||||||||
Sbjct 149 CTGCATAGAGCGGCACTGCGCGCGGAGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGTGATGCAGCGGC 222
Query 11 CGCTGAGGGTGGCGCAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCGGACAGCTCCAGAAGCTCATCGGCA 84
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 223 CGCTGAGGGTGGCGCAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCAGACAGCTCCAGAAGCTCATCGGCA 296
Query 85 TCTCCATTGGCAGCCTGCGCGGGCTGGGCACCAAGTGCGCTGTGTCCAACGACCTCACCGAGCAGGAGATACGG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTCCATTGGCAGCCTGCGCGGGCTGGGCACCAAGTGCGCTGTGTCCAACGACCTCACCGAGCAGGAGATACGG 370
Query 159 ACCCTGGAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATTT 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACCCTGGAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATTT 444
Query 233 GTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTC 518
Query 307 AGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGA 592
Query 381 GCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAG 666
Query 455 AAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAG 740
Query 529 ATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAA 814
Query 603 GTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATGA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATGA 888
Query 677 GAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCAGCC 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 889 GAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCC 962
Query 751 AGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGC 1036
Query 825 ATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTC 1110
Query 899 TGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACA 1184
Query 973 GCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCC 1258
Query 1047 AACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTG 1120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AACAATGCGAGCATTGTTC-------------TCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTG 1319
Query 1121 TTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGAT 1194
||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTCCTGCCTTGAGGTTGCCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGAT 1393
Query 1195 CCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCA 1268
||||||||||||.||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||||||
Sbjct 1394 CCTTCGCAGCAGCTCCTGCAGCAGAGCCTTGAAGGAGTGTGTAGTCTTCAGCACTTGGACCCTCAGGGAGCCCA 1467
Query 1269 GGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAATG------------------------- 1317
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 GGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAATGTAGCTGCCCCTTCGTATTTGAAGCA 1541
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1542 GAGTGATTTGGCCTCAGCAGCAGCGAAACAGACTTTACCCCTTATTTGGGATGTGTGAAAAATTTTTACAGGAA 1615
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1616 GTAGACTTTTTTCAGAGGACACATGAACCATTAACAAGAAAAATATTTAAATAAGAAACTCACCAAGCCAGGAG 1689
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1690 AATAATGAATACCTGGATGTGCCCCCTAGGAATCTGGATCTCTTCTCTTTTCCCCACCCTGCCCTCAACTCCCC 1763
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1764 TTACATACATACAGCCTGGATCACAAGACCCAAGAAAACCATTCCACCAGCTGCTGAGAGAAGAGCCACAAAAG 1837
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1838 GACCCAGAACTTCTCCATGGCTACCTTAGAGCACCCTAAAATGTGCTAACAGCCATTGTTAGCATTCAGGAGCT 1911
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1912 GTTTATTCCCATTTTCACACTACACTAAAGAATTTTAAACAATCACAAGATAGACTGGCTGGAAGTTGGTGCTT 1985
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1986 GGAACATCCCACGTCACCTAAAAGCACAGTGCTGCAATCTCAGAAACCCCAGGCTCAGCCAGCAGAGAGAGGAG 2059
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2060 AAGCAGCTGGACATTGGAGACTATGATTGGACATTAGAGAGAAGGAGCTTGACTTCACAGAGAAAGCATGATGG 2133
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2134 AATAATTTCAGAGAAAAGTCTGGCCAGGGATGACCAGACTTCAGGGGAAGATAATCTTGCTCAATATCCTTTTC 2207
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2208 TGCTCCCCTTCCTGCTGAGAGTCACTTTGATTGGCAATAAAATATCTCACATTTACCATCTTCAATTTGTTCTT 2281
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2282 GCAACCTCATTCCTCCTGGATGCCAGACAAGAACTCAGGTGCCATGAGTATGGGTGCAAAAGGCTATCACACTG 2355
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2356 TCCCTCCACTGAGCTGTTAACACTTAAGCTATCCATGGACAGCAAAGCTAAAAGGGCACTGTAAGAGTCCTTCT 2429
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2430 GGGGTTTCAGAAGTCATGAGCATCCCCCAGATGCTGCCATGGGGCCAGTACAGAGTTTGCTCCTGCCAGAGTCC 2503
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2504 AAAAATGTCTCAGCTCCTGCACCCAGTCACCTGCATGCTCCCCCTCCCACAAGTGGTGGAGCACAGTGGGCTGA 2577
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2578 GTGAGTGGAGTTTGCCCCTGCCAGCACCCGTGCACTCCAGTTCCCACCTGTGAAGGTGTCAGAGAGATATTCTG 2651
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2652 CTTAAAAATCAGAGTGACTCCATCTTAAATAGCAGCTGGGTGAGATAAGGCTGAGACCTACTGGGCTGCATTCC 2725
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2726 CAGGAGGTTAGGCATTCTAACCTTCTATCAGGATGAGATAGAAGGCCAGCATAAGATATAGGTCACGAAGACTC 2799
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2800 TGCTGATAAAACAGGATGTGGTTTAAATAAATGCCAGCCAGAACCCACCAAAACCAAGATGGTGATGCTCATTC 2873
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2874 TCACTGCTCATTATATGCCAGTATAATGCATTTGCATGCAAAAAGACTCTACCACCAGTGCCATGACAGCTTAC 2947
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2948 AGATGCCATGGCAAGATCTGGAAGTTACCCTGTAGCCTCTAAAATGGGGAAGAACCCTCAGTTCTGGAAAATTT 3021
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3022 CTGCCCCTTTCCTGAAAAACTCATGAATAATCTACCCTTTGTTTAGCATATAATCAAGAAACAACTATAAGTAT 3095
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3096 AGTCAATCGAGCAGCCAATCTCACCGCTCTGTCTATGGAGTAGTCATTCTTTTATTTACATCTCTAATAAAATT 3169
Query 1318 ----------------- 1317
Sbjct 3170 GCTTTCACTTTACTGTA 3186
