Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13723
- Subject:
- NR_146906.1
- Aligned Length:
- 3856
- Identities:
- 1298
- Gaps:
- 2552
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGGGCGGGAGCGGCAGACTCCGCTGCCAGCTCTACTGGCGTCCTGGCAAGGGCAGCGCCGAGGGGCGCTCCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCCAGCTCTCCCGGCTCGGGGGTTCCTTGCCTAGGCGCCAGAGCCCCGGGCTCCCTGCCTCGGCCGCTGTGGC 148
Query 1 ----------------------------------------------------------------ATGCAGCGGC 10
||||||||||
Sbjct 149 CTGCATAGAGCGGCACTGCGCGCGGAGGCGATGGGAGAGAAGAAGGAGGGCGGTGGCGGGGGTGATGCAGCGGC 222
Query 11 CGCTGAGGGTGGCGCAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCGGACAGCTCCAGAAGCTCATCGGCA 84
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 223 CGCTGAGGGTGGCGCAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCAGACAGCTCCAGAAGCTCATCGGCA 296
Query 85 TCTCCATTGGCAGCCTGCGCGGGCTGGGCACCAAGTGCGCTGTGTCCAACGACCTCACCGAGCAGGAGATACGG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTCCATTGGCAGCCTGCGCGGGCTGGGCACCAAGTGCGCTGTGTCCAACGACCTCACCGAGCAGGAGATACGG 370
Query 159 ACCCTGG------------------------------------------------------------------- 165
|||||||
Sbjct 371 ACCCTGGAGGCCTGTAAATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCTAGCTTATCTGGGT 444
Query 166 ----------------------AGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATG 217
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTCAGTCAGCTCTATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATG 518
Query 218 CGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGC 592
Query 292 TCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAA 666
Query 366 ACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATG 740
Query 440 ATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCAT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCAT 814
Query 514 GGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACC 888
Query 588 CTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGT 962
Query 662 CCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTG 1036
Query 736 CTAGAGGATTCAGCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGA 809
||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGA 1110
Query 810 AGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGA 1184
Query 884 AGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCAC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCAC 1258
Query 958 CCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGC 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGC 1332
Query 1032 TGCTAAAACCTGTCCAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACA 1105
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1333 TGCTAAAACCTGTCCAACAATGCGAGCATTGTTC-------------TCAGGCACTATGCCTACCTCCGAGACA 1393
Query 1106 GTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATC 1179
|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GTCTTTCTCATCTTGTTCCTGCCTTGAGGTTGCCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATC 1467
Query 1180 ATACCTCAAGAGGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGA 1253
|||||||||||||||||||||||||||.||||||||||||||||||||.||||||.||||||||||||||||||
Sbjct 1468 ATACCTCAAGAGGATCCTTCGCAGCAGCTCCTGCAGCAGAGCCTTGAAGGAGTGTGTAGTCTTCAGCACTTGGA 1541
Query 1254 CCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAATG---------- 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 CCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAATGTAGCTGCCCC 1615
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1616 TTCGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAGAGACCTACAAAATGGAATTCATGTAGAG 1689
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1690 TGGTGTGGAGAATAAGCAGGTGGTGATTATACATCACATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAATAA 1763
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1764 CAGCACGAACTACACGAGGACTTTACCCCTTATTTGGGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTT 1837
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1838 CAGAGGTATTTCATCGCTGATTTGCCCCACTTGCAGGACAGCTTTGTGGACAAACTCCTTGACCTTATGCCCCG 1911
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1912 ATTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGCATC 1985
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1986 TCCCACTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATTGAGCCAGCAGGCGAGTCAGACAACCCTTTG 2059
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2060 CGGTTTACCTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAACAC 2133
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2134 TGTTAAGGTCCAGGTCCCAGAGAGCTACTCACTGCATGTGTCTTTGACCTGCTGTTGATTCATCTCCTCTGCTA 2207
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2208 AGAAGGTGGCTGATGGCTGGGCTATTTACACCTAGGAGGGTGTTCCAGGCCAGGCCCCAGGGAGCCTAAAATAA 2281
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2282 TCAAAAAGGACACATGAACCATTAACAAGAAAAATATTTAAATAAGAAACTCACCAAGCCAGGAGAATAATGAA 2355
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2356 TACCTGGATGTGCCCCCTAGGAATCTGGATCTCTTCTCTTTTCCCCACCCTGCCCTCAACTCCCCTTACATACA 2429
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2430 TACAGCCTGGATCACAAGACCCAAGAAAACCATTCCACCAGCTGCTGAGAGAAGAGCCACAAAAGGACCCAGAA 2503
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2504 CTTCTCCATGGCTACCTTAGAGCACCCTAAAATGTGCTAACAGCCATTGTTAGCATTCAGGAGCTGTTTATTCC 2577
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2578 CATTTTCACACTACACTAAAGAATTTTAAACAATCACAAGATAGACTGGCTGGAAGTTGGTGCTTGGAACATCC 2651
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2652 CACGTCACCTAAAAGCACAGTGCTGCAATCTCAGAAACCCCAGGCTCAGCCAGCAGAGAGAGGAGAAGCAGCTG 2725
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2726 GACATTGGAGACTATGATTGGACATTAGAGAGAAGGAGCTTGACTTCACAGAGAAAGCATGATGGAATAATTTC 2799
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2800 AGAGAAAAGTCTGGCCAGGGATGACCAGACTTCAGGGGAAGATAATCTTGCTCAATATCCTTTTCTGCTCCCCT 2873
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2874 TCCTGCTGAGAGTCACTTTGATTGGCAATAAAATATCTCACATTTACCATCTTCAATTTGTTCTTGCAACCTCA 2947
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2948 TTCCTCCTGGATGCCAGACAAGAACTCAGGTGCCATGAGTATGGGTGCAAAAGGCTATCACACTGTCCCTCCAC 3021
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3022 TGAGCTGTTAACACTTAAGCTATCCATGGACAGCAAAGCTAAAAGGGCACTGTAAGAGTCCTTCTGGGGTTTCA 3095
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3096 GAAGTCATGAGCATCCCCCAGATGCTGCCATGGGGCCAGTACAGAGTTTGCTCCTGCCAGAGTCCAAAAATGTC 3169
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3170 TCAGCTCCTGCACCCAGTCACCTGCATGCTCCCCCTCCCACAAGTGGTGGAGCACAGTGGGCTGAGTGAGTGGA 3243
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3244 GTTTGCCCCTGCCAGCACCCGTGCACTCCAGTTCCCACCTGTGAAGGTGTCAGAGAGATATTCTGCTTAAAAAT 3317
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3318 CAGAGTGACTCCATCTTAAATAGCAGCTGGGTGAGATAAGGCTGAGACCTACTGGGCTGCATTCCCAGGAGGTT 3391
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3392 AGGCATTCTAACCTTCTATCAGGATGAGATAGAAGGCCAGCATAAGATATAGGTCACGAAGACTCTGCTGATAA 3465
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3466 AACAGGATGTGGTTTAAATAAATGCCAGCCAGAACCCACCAAAACCAAGATGGTGATGCTCATTCTCACTGCTC 3539
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3540 ATTATATGCCAGTATAATGCATTTGCATGCAAAAAGACTCTACCACCAGTGCCATGACAGCTTACAGATGCCAT 3613
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3614 GGCAAGATCTGGAAGTTACCCTGTAGCCTCTAAAATGGGGAAGAACCCTCAGTTCTGGAAAATTTCTGCCCCTT 3687
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3688 TCCTGAAAAACTCATGAATAATCTACCCTTTGTTTAGCATATAATCAAGAAACAACTATAAGTATAGTCAATCG 3761
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3762 AGCAGCCAATCTCACCGCTCTGTCTATGGAGTAGTCATTCTTTTATTTACATCTCTAATAAAATTGCTTTCACT 3835
Query 1318 -------- 1317
Sbjct 3836 TTACTGTA 3843
