Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13723
Subject:
XR_001748036.2
Aligned Length:
3139
Identities:
1248
Gaps:
1847

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCTGAGAGGGCCCGCGGGTAGGCATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCAGCCACAGGAGGAAATTGCTACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AATTGCATCATTGTTGGGTTTATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACATCCTGCAGAATGAAAAGTCTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGG  518

Query    1  -----------------------------------------------------------------ATGCAG-CG  8
                                                                             |||||| .|
Sbjct  519  TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG  592

Query    9  GCC--GCTG----------------------AGGGTGGCG-------CAGGGGCCCCGGCCAGCCCGGGGCTGC  51
            |||  ||||                      ||||    |       |||.|.||..|.||  |.||.|.|.| 
Sbjct  593  GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGG----GATTACTTCAGTGACCAAGACC--CACGTGTCAG-  659

Query   52  AGCAGTGCGGACAGCTCCAGAAGCTCATCG--GCATCTCCAT----------TGGCA-----------------  96
            |.|||      |||||..|.|||| ||| |  |||.||||||          ||..|                 
Sbjct  660  AACAG------CAGCTATAAAAGC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTA  725

Query   97  -------GCCTG-------CGCGGGCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GA  136
                   |||||       |.|  .|||...||      |||||||||.||      |||||.|        |.
Sbjct  726  TAATCAGGCCTGTAAATTACTC--TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGT  797

Query  137  CCTCACCGAGCAGGAGATACGGACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT  209
            |.|||...|||        ...|.|||| .||||||||||||||||||||||||||||||||||||||||||||
Sbjct  798  CGTCAGTCAGC--------TCTATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT  863

Query  210  TGATGATGCGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAAC  283
            |||||||||||||||.||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct  864  TGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAAC  937

Query  284  TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  938  TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG  1011

Query  358  AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTG  431
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1012  AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTG  1085

Query  432  GGAAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT  505
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086  GGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT  1159

Query  506  TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160  TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG  1233

Query  580  TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG  653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234  TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG  1307

Query  654  TCTGCAGTCCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC  727
            |||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308  TCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC  1381

Query  728  TGGCTGTGCTAGAGGATTCAGCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA  801
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382  TGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA  1455

Query  802  ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456  ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC  1529

Query  876  CATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGA  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530  CATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGA  1603

Query  950  GCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATT  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604  GCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATT  1677

Query 1024  TTCAATGCTGCTAAAACCTGTCCAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCT  1097
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1678  TTCAATGCTGCTAAAACCTGTCCAACAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCT  1751

Query 1098  CCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTC  1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752  CCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTC  1825

Query 1172  CCAGCATCATACCTCAAGAGGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAG  1245
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826  CCAGCATCATACCTCAAGAGGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAG  1899

Query 1246  CACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATC-----------------------------  1290
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct 1900  CACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGGATCTGCAAAGACTTGGAGAACTTCA  1973

Query 1291  -----------------------------------------------------------------AGGCCTTGC  1299
                                                                             |||||||||
Sbjct 1974  ATCTGAATTGGCAGGAGTAGCTGATTTCTCTGCCACCTATCTTCGCTGTCAACTACTTCTCATCAAGGCCTTGC  2047

Query 1300  AGGAAAAGTCGTGGAATG--------------------------------------------------------  1317
            |||||||||.||||||||                                                        
Sbjct 2048  AGGAAAAGTTGTGGAATGTAGCTGCCCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAG  2121

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2122  ATTATGGAAGAGACCTACAAAATGGAATTCATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATCA  2195

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2196  CATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAGTAACAGCACGAACTACACGAGGACTTGACCCCTTATTTG  2269

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2270  GGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGACAGCTTTGTGGACAAACTCCTTGACCTTA  2343

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2344  TGCCCCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGTGCCTTT  2417

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2418  CTGCATCTCCCGCTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATCGAGCCAGCGGGCGAGTCAGACAA  2491

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2492  CCCTTTGCGGTTTACCTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTC  2565

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2566  AGAACACTGTTAAGGTCCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATTCACCCCAAGCCTGCAGACTTC  2639

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2640  CGGAATCCTGGCCCAGGGCGGCACCGGCTCATCACTCAGGTTTATCTCTCCCACACCGCTTGGACAGAGGCATG  2713

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2714  CCAGGTGGAAGTGAGGCTGCTGCTGGCCTACAACTCCAGTGCTCGCATTCCAAAATGCCCCTGGATGGAGGGTG  2787

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2788  GTGAGATGTCACCACAGGTGGAAACCAGCATCGAGGGCACCATTCCCTTCAGCAAGCCTGTAAAAGTTTATATA  2861

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2862  ATGCCCAAACCTGCACGGCGCTAAGGCAAAAACAGTCTTCCCAACCGTGGCCTAGAGGGCCCTTCTTAGGTGTC  2935

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 2936  AGAATGAGCCAAGCCTGAAGCACTTCACCTGGAATTGATGTGTAGGCTTAAGGAGTATGTGACCCTTACAGTCT  3009

Query 1318  --------------------------------------------------------------------------  1317
                                                                                      
Sbjct 3010  CATCTGGTATCAAACACAGGATAAATTGTTTCTTCATTAAAAAATAAAAAACCTTCAAGTCTACTTACCCTTCT  3083

Query 1318  -------------------------------  1317
                                           
Sbjct 3084  CCTGTCCACAATAAAGTTGAGAAAACACCAA  3114

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