Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13803
Subject:
NM_001318226.1
Aligned Length:
3107
Identities:
208
Gaps:
2893

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGATGAAGAAGAGAACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTTCTGGACCGCCAGGAGCTGACCCAGCTCTGCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGACGCTTCTCGGAAACGACCATTTCGCCAGGGTTAACTTTGAGGAATTTAAGGAAGGTTTTGTGGCTGTGTTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTGGAATCAGCTGCCTCCAGTGCCATCCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCTGCCACAGAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCAGACGCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGGAGAGTCCCAAGTCAGATGAAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACAGCTGCAGACCTGGGATTCTGAGGACTTTGGGAGCCCCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTGGGCAGCAGCGGACACCTGAGCGAGCAGGAGCTGGCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGACCTGTTTAACAAACTGGATCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTTCTAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGTCTTCCACTCGGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCACAACCTCATCCCTCGTGTCCCTGTGCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CGCTTTTCCTGATCAGGTCCTGGCCATGTGGACCCAGGAGGGGATTCAGAATGGCAGGGAGATCTTGCAGAGCC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACCTGGGCCCTTGACAACGAGCTCATGACAGTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCAAGGGCAGGTGGAGCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCTGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACCTGGAGTTTGTGAAAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGATGGACGACTGCCACTCCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGCATCTGGAGCAGGGGTACCGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GAAAGGCTGAGCCTCCTGCGGTCTGAGGTGGAGGCGGAGCGAGAGCTGTTCTGGGAGCAGGCCCACAGGCAGAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGCCGCGCTGGAGTGGGACGTGGGGCGCCTGCAGGCTGAGGAGGCTGGCCTCCGCGAGAAGCTGACCCTGGCCC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGAAGGAAAACAGTCGCCTACAGAAGGAGATTGTGGAAGTGGTGGAAAAGCTTTCGGATTCGGAGAGGCTGGCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTGAAGCTGCAGAAGGACCTGGAGTTTGTGCTGAAGGACAAGCTGGAGCCACAGAGTGCAGAGCTCCTGGCCCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGAGGAGCGGTTCGCAGCAGTCCTGAAGGAATACGAGCTCAAGTGCCGGGACCTGCAGGACCGCAACGATGAGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGCAAGCTGAGCTGGAAGGCCTGTGGGCGCGGCTGCCCAAGAACCGGCACAGCCCCTCATGGAGCCCGGATGGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CGCAGACGGCAGCTCCCTGGACTCGGCCCAGCAGGCATTTCATTCCTGGGTAATTCTGCTCCAGTGAGTATAGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AACGGAGCTGATGATGGAGCAGGTAAAGGAGCATTACCAAGACCTCAGGACCCAGCTGGAGACCAAGGTAAATT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ACTACGAAAGGGAAATTGCGGCACTGAAAAGGAACTTTGAGAAGGAGAGGAAGGACATGGAGCAGGCTCGCAGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CGCGAGGTCAGCGTGCTGGAGGGTCAGAAGGCCGACCTGGAGGAGCTCCACGAGAAGTCTCAGGAGGTCATCTG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGGCCTGCAGGAGCAGCTGCAGGACACAGCCCGCGGCCCCGAGCCTGAGCAGATGGGCCTGGCACCCTGCTGCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCCAGGCACTGTGTGGCCTGGCCCTGCGGCATCACAGCCACCTGCAGCAGATCAGACTGGAGTTCCATAGACTT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TCTGAAGAAAACACTTTGTTGAAAAACGATCTGGGAAGGGTTCGGCAAGAGCTTGAAGCTGCAGAAAGTACTCA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CGATGCACAGAGGAAGGAAATTGAGGTTTTAAAGAAAGACAAGGAAAAGGCCTGCTCTGAGATGGAGGTGCTCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ACAGACAGAATCAGAACTACAAGGATCAATTATCCCAGCTCAATGTCAGGGTTCTTCAACTGGGACAGGAGGCT  2442

Query    1  ---------------------------------------------ATGTTAACACAGAGCCTGGAGGAGGTGGT  29
                                                         |||||||||||||||||||||||||||||
Sbjct 2443  TCTACCCACCAGGCCCAAAACGAGGAGCATCGTGTGACCATTCAGATGTTAACACAGAGCCTGGAGGAGGTGGT  2516

Query   30  TCGCAGTGGGCAGCAGCAGAGTGACCAAATCCAAAAACTTAGAGTTGAACTTGAATGCCTGAATCAGGAACATC  103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TCGCAGTGGGCAGCAGCAGAGTGACCAAATCCAAAAACTTAGAGTTGAACTTGAATGCCTGAATCAGGAACATC  2590

Query  104  AGAGCCTGCAGCTGCCATGGTCAGAGCTGACCCAGACCCTTGAGGAAAGTCAAGACCAGGTG--GGTGTGAGC-  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||   |||| 
Sbjct 2591  AGAGCCTGCAGCTGCCATGGTCAGAGCTGACCCAGACCCTTGAGGAAAGTCAAGACCAGGTGCAGG---GAGCT  2661

Query  175  -----GATGGCTGGAGGCACTGGGTCCAGTCCCA------------------CCTGG-----------------  208
                 || |||| ||||||   ||.||||.||||                  .||||                 
Sbjct 2662  CACCTGA-GGCT-GAGGCA---GGCCCAGGCCCAGCACTTGCAGGAGGTCCGGCTGGTGCCCCAGGACCGTGTG  2730

Query  209  ---GAGCAGCATCACCG---------------------------------------------------------  222
               ||||.|||||.||.                                                         
Sbjct 2731  GCCGAGCTGCATCGCCTGCTCAGCCTTCAGGGAGAGCAGGCCAGGAGGCGCCTGGATGCACAGCGGGAAGAACA  2804

Query  223  --------------------------------------------------------------------------  222
                                                                                      
Sbjct 2805  TGAGAAACAGCTGAAAGCCACAGAAGAGCGGGTGGAAGAGGCGGAGATGATTCTGAAGAATATGGAAATGCTCC  2878

Query  223  --------------------------------------------------------------------------  222
                                                                                      
Sbjct 2879  TCCAAGAGAAAGTGGATAAGCTGAAGGAGCAGTTTGAAAAGAACACGAAGTCCGACCTGCTGCTGAAGGAGCTG  2952

Query  223  --------------------------------------------------------------------------  222
                                                                                      
Sbjct 2953  TACGTGGAGAACGCCCACCTGGTGAGAGCACTTCAGGCCACCGAGGAGAAGCAGCGAGGCGCCGAGAAACAAAG  3026

Query  223  -------------------------------------------------------------------------  222
                                                                                     
Sbjct 3027  CCGCCTCTTGGAAGAAAAAGTTCGCGCTCTCAACAAACTCGTCAGTAGGATTGCCCCCGCAGCCCTCTCTGTG  3099

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