Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14237
Subject:
XR_946721.2
Aligned Length:
3183
Identities:
1561
Gaps:
1621

Alignment

Query    1  ---------------------------------------------------------------------ATGGA  5
                                                                                 |||||
Sbjct    1  CTCGCCGCTTGTGTGGCTCGCTGGCTGCGTGGCTCGGTTCTTGTGAGCGAAGCTTTGTCCGGTTCGGCAATGGA  74

Query    6  CG------------------------GAATCGTCACTGAGGTTGCAGTTGGCGTGAAGAGAGGATCTGACGAAC  55
            ||                        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CGGGTATGTAATCGGGCCGGCGAGAAGAATCGTCACTGAGGTTGCAGTTGGCGTGAAGAGAGGATCTGACGAAC  148

Query   56  TACTCTCAGGCAGTGTTCTCAGTAGTCCGAACTCTAATATGAGCAGCATGGTAGTTACAGCCAATGGTAATGAT  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TACTCTCAGGCAGTGTTCTCAGTAGTCCGAACTCTAATATGAGCAGCATGGTAGTTACAGCCAATGGTAATGAT  222

Query  130  AGTAAAAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAATTACCTGG  203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGTAAAAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAATTACCTGG  296

Query  204  GGAAGTAACAGAAACTGAAGTTATTGCTTTAGGCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAG  277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAAGTAACAGAAACTGAAGTTATTGCTTTAGGCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAG  370

Query  278  GAAAAAATCAGGCATTTTTGGAACTAGCAACCGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTG  351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAAAAAATCAGGCATTTTTGGAACTAGCAACCGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTG  444

Query  352  ACACCTCATCTTCGTAACCAACCAATATATATCCAGTACTCGAATCACAAAGAACTAAAGACAGATAATACATT  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACACCTCATCTTCGTAACCAACCAATATATATCCAGTACTCGAATCACAAAGAACTAAAGACAGATAATACATT  518

Query  426  AAACCAACGTGCTCAGGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAGTGGCACCA  499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAACCAACGTGCTCAGGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAGTGGCACCA  592

Query  500  CAGTTAGCGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAACATGTACTACCCT  573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAGTTAGCGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAACATGTACTACCCT  666

Query  574  GTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATAATCACATTTACAAAAAA  647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATAATCACATTTACAAAAAA  740

Query  648  TAACCAGTTTCAAGCTTTGCTCCAGTATGGTGATCCAGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTC  721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TAACCAGTTTCAAGCTTTGCTCCAGTATGGTGATCCAGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTC  814

Query  722  AGAATATTTATAATGCCTGCTGTACCCTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAAC  795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGAATATTTATAATGCCTGCTGTACCCTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAAC  888

Query  796  AATGATAAAAGTAGGGATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTAT  869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AATGATAAAAGTAGGGATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTAT  962

Query  870  TGCTGCAGCATTTGCCAAGGAGACATCCCTCTT---------------AGCTGTTCCAGGAGCTCTGAGTCCTT  928
            |||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||
Sbjct  963  TGCTGCAGCATTTGCCAAGGAGACATCCCTCTTAGGGCTTCCTGTTGCAGCTGTTCCAGGAGCTCTGAGTCCTT  1036

Query  929  TGGCCATTCCAAATGCTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCT  1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGGCCATTCCAAATGCTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCT  1110

Query 1003  GGTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTT  1076
            |||||||||||||||||||||||||||||||||||||||||                                 
Sbjct 1111  GGTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGA---------------------------------  1151

Query 1077  CGGTGTTTATGGAGATGTGCAGCGTGTGAAGATTTTATACAATAAGAAAGACAGCGCTCTAATACAGATGGCTG  1150
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152  -GGTGTTTATGGAGATGTGCAGCGTGTGAAGATTTTATACAATAAGAAAGACAGCGCTCTAATACAGATGGCTG  1224

Query 1151  ATGGAAACCAATCACAACTTGCCATGAATCATCTTAATGGACAGAAAATGTATGGAAAAATTATTCGTGTTACT  1224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225  ATGGAAACCAATCACAACTTGCCATGAATCATCTTAATGGACAGAAAATGTATGGAAAAATTATTCGTGTTACT  1298

Query 1225  CTGTCTAAACATCAGACTGTACAGCTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAAGATTTTGGTAA  1298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299  CTGTCTAAACATCAGACTGTACAGCTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAAGATTTTGGTAA  1372

Query 1299  TTCCCCATTGCATCGTTTTAAGAAACCTGGATCCAAAAATTTTCAAAACATTTTTCCTCCTTCTGCCACCCTTC  1372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373  TTCCCCATTGCATCGTTTTAAGAAACCTGGATCCAAAAATTTTCAAAACATTTTTCCTCCTTCTGCCACCCTTC  1446

Query 1373  ACCTATCTAATATCCCTCCATCAGTAGCAGAAGAGGATCTACGAACACTGTTCGCTAACACTGGGGGCACTGTG  1446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447  ACCTATCTAATATCCCTCCATCAGTAGCAGAAGAGGATCTACGAACACTGTTCGCTAACACTGGGGGCACTGTG  1520

Query 1447  AAAGCATTTAAGTTTTTTCAAAGAGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCTATTCA  1520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521  AAAGCATTTAAGTTTTTTCAAAGAGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCTATTCA  1594

Query 1521  GGCCTTGATTGATCTTCATAATTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCAAAGTCAACAA  1594
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1595  GGCCTTGATTGATCTTCATAATTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCCAAGTCAACAA  1668

Query 1595  TT------------------------------------------------------------------------  1596
            ||                                                                        
Sbjct 1669  TTTAAAAATGGGAAGATGAAGATTGGGGGTGAATCACATTGTTCAATGTCATCACCTATTTGACTGTTCAGAAA  1742

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1743  AGTGGGGACCAGAGTTTGATTTTTTTTGTTTTTGTTTTTTTGGGGTTTCTTTTTTTTTTCCATGCTGTTATCAT  1816

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1817  TCCTTGGTTATAAAATGAAATGGCATATGTAAAGGCAGAGTTGTTAACTGCTATATTTCATCTGTTCTATAGGG  1890

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1891  AAGCCATTTTGTCTGTTTAAAATTTCAGTTTAATTTTGCTTTTTTTTTTTTTTTTTTTTTCCTTTCAACTTAGT  1964

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1965  TGACATACGTGCCTTAAAAAGGAAAACTAGTGTTGCTATTGTGCATTTACTAGAAAAAAGGAATTGGTTGTTTA  2038

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2039  GGGCACACTGTTATATGGGAATTAAAATATGTTTAGGCAGGGGTGTGTAAAAAGGTTAAGTTTTTGTTTCTCCT  2112

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2113  GCTTGGAACTTATTTTGAATTACTGGCTTGTCACCTTTTTTTCTATTTAATCAAATAAGATACATGATATTGAA  2186

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2187  AGAATAAAGCAGCATTTTTAGTTTTTACTACCTTAGGCTTTATTGCTTTGAAAACAACATTGGCCTTTTGTATC  2260

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2261  TCACAATTCTGGTCTAGATTCAGTTATGAATGTAGGCATTAGTTAAAATTAACAAGATGCAGAGTATTAATTTC  2334

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2335  TTAAGACAACAAAGTGATTTCTGTAAGTTTGAGCCCTATGTGGAAAGCATTGTGGAATCTTAACCTTTTCGTAC  2408

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2409  ACACTCTTGTGGGACGTATCATATAAATGTCAGCACTAAGTAATGTCTTGTTTGTGGCTGAATATTTTTCGTAG  2482

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2483  ATGTTTTTGAAGTTGACATGACTTACGTGCATTTAAATATATATTGCCATCCTTAGTTTGTAATTAAGATTTGG  2556

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2557  AATATGGTTGTGGATTTCTGAGCATGTGCAGACTGGTCTAGCTAGTTCAGGAACTGGTGCATGTATTTTTCAAA  2630

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2631  GATAAAGAAAGTGTACTGCGAAAATATGCAGGAAGATTAATTTTGTGGCAGTTTTCTAAAACTGACAACCAGGT  2704

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2705  GGGACCAAAGTTTATGTGCCTTTAGTCTTAATTTACCTTGCATTGTAATATTCAGTTTTAATAAATCTTCAAAA  2778

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2779  TATTTTGTATTTAGGAATAGATCTGACTTTAATAAAAACATGGCTCAGAATCTACAGGTCAAATTAATTTGAAC  2852

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2853  AGTTCTTGTCAATCCGAATTGTTGATTCTGTTTAAATGACCAATACTTTTTGAAATTGATGTACTTAGTTTCAA  2926

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2927  GATTCATAGATTCTGTTATCTATGTAGACAGAATGGTCATGTATATTTTCTATTAGTTGAGTTTTTACATCTTT  3000

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 3001  AGAAATGTAAAATTCAGTATAGTTTGAAAGCGGCACAATTAAAAATTAATTTTCTAACAAAGTTGGGAGGTTTG  3074

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 3075  ATGGTTGTTTAATTTCATTTTGTGTGTACTCTGCTTACCCCTGTAGCATGCTCAATAAACACTTCTGTAGCTCT  3148

Query 1597  -  1596
             
Sbjct 3149  A  3149

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