Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14269
Subject:
XM_006507817.3
Aligned Length:
1437
Identities:
1073
Gaps:
202

Alignment

Query    1  ATGCTGGGGGTCCGCTGCCTGCTGCGGTCCGTGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TTCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAG  222
                                                         ||||.||.||.||||||||||||||||||
Sbjct    1  ---------------------------------------------ATGACGGATCTTCTTTGGAAAGCCTTCAG  29

Query  223  GTTGTTGCAGATTCAGGCCTTGACA----GTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGC  292
            .|||||||.||||||.||.|.||||    ||||||||||.||||||||||||||||||.||||.||||||||||
Sbjct   30  ATTGTTGCGGATTCAAGCTTCGACAGTAGGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGC  103

Query  293  TGATAAAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGAT  366
            ||.|.|||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.
Sbjct  104  TGGTCAAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAA  177

Query  367  GCCAAGGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTG  440
            |||||||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||
Sbjct  178  GCCAAGGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTG  251

Query  441  TAGGACTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGG  514
            .||||||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.||||||||
Sbjct  252  CAGGACTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGG  325

Query  515  ACAGTGGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAA  588
            |||.|||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||
Sbjct  326  ACAATGGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAA  399

Query  589  CTTGAACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGG  662
            .|.||.||||||.|||||.|.||||.|||..||||||.||||||..||||||||||||||||||||||||||||
Sbjct  400  GTGGAGCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGG  473

Query  663  ACAACTTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAA  736
            |||||||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.|
Sbjct  474  ACAACTTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGA  547

Query  737  ATTCTCAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAA  810
            ||||||||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.
Sbjct  548  ATTCTCAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAG  621

Query  811  GATCTTATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGT  884
            |||||.||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||
Sbjct  622  GATCTCATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGT  695

Query  885  TGAACTCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAA  958
            ||||.|.||||||.|.||||||||..|||||||.||||.||||.|||||||||||||||||||||||||..|||
Sbjct  696  TGAATTGTGTCACCAGTTCATAGCTGCTGGCCAGAAGGGCAGACTAGAACATATGCTAAAAAACAACTTCCTAA  769

Query  959  TCATTTCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTAC-CCCAGAGTGGGG  1031
            |||||||||||||.||.|||.|.||||||||||||||||||||||||||||||.||||||| |||| |||||||
Sbjct  770  TCATTTCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACCCA-AGTGGGG  842

Query 1032  TGCTGACCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATT  1105
            ||.|||.||||..||.||||||||.|||||||||||||..|||||||||||||||||.|||||.||.|||||||
Sbjct  843  TGTTGATCTACAAACGGAACATGAGAAGTACCTGGTGAGACACTGTGGCAACATACCAGTCTTTGTCATTAATT  916

Query 1106  ATCCATTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTTGAT  1179
            ||||||.|..|||||||||.||||||||||||||.|||||||||||.||||||.|.||.|||||||||||.|||
Sbjct  917  ATCCATCAGAACTCAAGCCCTTCTACATGAGGGAGAATGAAGATGGTCCTCAGAATACAGTTGCTGCTGTAGAT  990

Query 1180  CTTCTGGTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCG  1253
            |||||||||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.|||||.||||
Sbjct  991  CTTCTGGTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCCTAGAGCAGCG  1064

Query 1254  CTTAGCCAGATCGGGACTTACAGAAGTCTACCAATGGTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCACAT  1326
            ..||||.|||||.||||||||..|||.||||||.|||||.|||||.||||| |.| ||||||||||||||.|||
Sbjct 1065  ACTAGCAAGATCAGGACTTACGAAAGCCTACCAGTGGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCCCAT  1137

Query 1327  GGAGGTTTTGGGATGGGATTTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCC  1400
            |||||.||.|||||||||||||||||||||.|.|||||||||.|.||.||||||||||||||||||||||||||
Sbjct 1138  GGAGGCTTCGGGATGGGATTTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTATCCC  1211

Query 1401  TTTCCCAAGGTTTCCTCA-TCATGCCTTTTA  1430
            |||.|||||||||.|||| ||.||.|||||.
Sbjct 1212  TTTTCCAAGGTTTACTCATTCGTGTCTTTTG  1242

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.