Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14269
Subject:
XR_001747963.2
Aligned Length:
4188
Identities:
1401
Gaps:
2785

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTGGCGTGGTGTGGTAGGAGTGGTTGCGCGTGTTGCGGCCCGGGTTCTGTTCGTAGGTTTACAATTGTCGCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTAGTGGGGCGCCCCAGCTGCCAACTGCACGTGGTTTCTTTCTGGCGTTTGCCTAGTGTCCTGTCCATTCCGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGTTGGGAAGTGGGAAGCGGAGAGGTTCTGTGGGGACAGAGCTGGGAGTCCTGAAGGAGAAAGCGCGCAGCCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGGGCTCTGGAGTGCCTTAGAGCAGAGCTGCGGCCGCGGAAGGGGAGCAGCTGAGAAAGGAGGGCCGCTGCAG  296

Query    1  ----------------------------------------------------------ATGCTGGGGGTCCGCT  16
                                                                      ||||||||||||||||
Sbjct  297  GCGGGGTTCGAACCGTGGGGTCTGGGCTGCTCCCGCGGAGGGCCTGGGCGGACGCGGGATGCTGGGGGTCCGCT  370

Query   17  GCCTGCTGCGGTCCGTGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCAGCCAAACTGAGCGTG  90
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCTGCTGCGGTCCGTGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCAGCCAAACTGAGCGTG  444

Query   91  CGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGATTCGTTCTGTCCGATC  164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGATTCGTTCTGTCCGATC  518

Query  165  CCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGGTTGTTGCAGATTCAG  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGGTTGTTGCAGATTCAG  592

Query  239  GCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATAAAAAGTCCATCCAAA  312
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCCTTGACAGTAGAGAATTAAATTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATAAAAAGTCCATCCAAA  666

Query  313  AGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAAGGATTTCCCCATCAA  386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAAGGATTTCCCCATCAA  740

Query  387  ATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGACTAACGTTCTGGGTT  460
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATATAAAGAGAGGCATCCTCTGGAGTATCTGCGACAATATCCTCACTTTAGGTGTAGGACTAACGTTCTGGGTT  814

Query  461  CTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGTGGCTTTGTACATATT  534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGTGGCTTTGTACATATT  888

Query  535  CATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGAACCTTCAGGCAAACT  608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGAACCTTCAGGCAAACT  962

Query  609  TAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAACTTCATCTAGAAGTGA  682
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAACTTCATCTAGAAGTGA  1036

Query  683  TGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCTCAGAGCCGGAGGCAC  756
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCTCAGAGCCGGAGGCAC  1110

Query  757  CTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCTTATGCAGGTTATAGA  830
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCTTATGCAGGTTATAGA  1184

Query  831  GGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAACTCTGTCACAAATTCA  904
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAACTCTGTCACAAATTCA  1258

Query  905  TAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAATCATTTCTTATACTGAAGCA  978
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAATCATTTCTTATACTGAAGCA  1332

Query  979  GTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTACCCCAGAGTGGGGTGCTGACCTACGGACTGAACA  1052
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTACCCCAGAGTGGGGTGCTGACCTACGGACTGAACA  1406

Query 1053  TGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCATTAACACTCAAGCCTT  1126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCATTAACACTCAAGCCTT  1480

Query 1127  TCTACATGAGGGATAATGAAGATGGCCCTCAGCACAC-------------------------------------  1163
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct 1481  TCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGGCTGTAATAACTGGCTGTAAGTTCGCAAGAGTTCC  1554

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 1555  TGTAATGGATGCAGTGCAGTCTTGAAAAAAATAAGACAGGTGTGTTTCATAGGTGCCTTCTTTAGGGAACCAAA  1628

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 1629  AGAGAAGGATGGGGAAATATCTAATCTACACTTGTAACTTTTGGCCAGAGGGTAATAAATAGTAAAATGGTATG  1702

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 1703  TTTTTACAGTTATAATTTATCTTCCTTTCTCCCCACCTCTCAGTAGAAATGAAGGTATGCGCTGTGGTGTACTG  1776

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 1777  AAAAGTACACAGGATGCAGAGTGGTTCTGGGTTTGAAATCTAGATACCTTACTAGTTACCTGTGTCACCTCAGG  1850

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 1851  CAAGTCTCTGTGATCTTTCAGCCTCAATTTCTCCCTCTGTATAATCAGAGAATTGGATTAAGTGACCTCTAAAG  1924

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 1925  TATTACCTCTCTAAGATTCTCTGATTTCCTGTAGCCTAAGTTTTTCTTCATATGCATGGATAAGACTAACTTAT  1998

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 1999  AAATTACTGAGCATATTTGATCATTTGAAAGGGACAGATCATGGGAAAATGAATCTAAGCAAATATGCAAAATG  2072

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2073  CCATATGCCTCTGAGGCTGGTCTCCAGGTAAGTCCCTCAAAGCCAGGTGGCAGATGTTCAGCTGGGGGAGTGGC  2146

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2147  TTCACAGAGAAGAATAGTCTTTTATTCTACACACGTGTAATTAGGAAAAAGTGACTGCCCCTCAGTCCTTGATG  2220

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2221  AGATGCCACAATCACCAGGTAGTGTTCTAATTTTCAAAATTATATCAGTATTACTTAGCAAACCAGAGAAAGGT  2294

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2295  CAGCATTAGTGGGCATTCAGTAAAGTACATACTGTGAAGTCAACTCAGAAAGGAGAATACTCAGCCAAGGGGTG  2368

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2369  TGCAATAAATTTCCCAGAGCTGTGGCTAATTAACCAACCTGCATCAAAATAGCTCGAGCCACCAACCAACAGAA  2442

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2443  ATAGTGATGAAGGGAATTGCCAATTTTCCCCATATCTAGGACTAAAGAGAATCCTAGAAATTTTTGTCAAAATT  2516

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2517  GAAAGTATCCATTTCAGTCTGTCGTAAAATACTTTGAGATTCTTTATCATGACATATTTTATATTAATACTTTG  2590

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2591  AATTGTAGAGTTAGGGAACATAGGGAAGAGAAATCCTTTTATGTGTGTGATACAGACTTCTAAGGTTTTGTTAC  2664

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2665  CAAACTGTTTCTCCCATTTCAGTCTTCCCAGTGTGTCTTAATTGAACAAGTTTGGTTAAAGCAACTGAGATAAA  2738

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2739  AGTGAACGTAAATGCCTCCTAAGTCTTTTGGTAGAGTAAGAGTGTCGAGGAATCTTCATTATTAAAAGTAGCAA  2812

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2813  GGAAAAGACATTTAGGGAGTTGAGAAATTATTTATATTGTCTCACTTAACTAAATAAGATTAACTTTGTAAGAT  2886

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2887  TAGAGATTACTTAAAACATGGTAGACAGAGGAAAATGGAAGAAAAGATTAACAAAGATTAAATTTTTGACGTTC  2960

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 2961  CAAATTGACATCTATTATTGAGTACCCGTGTGGCAAGCATAACGTTAAAACATTCAAAAGAGAAAACAATAATG  3034

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 3035  TTTATCGAGTATGTGCCGATAATTAACTTTTATCCCTTTCTTACAGATGAGGCTGCTACCTCTCAGTGCAGCAG  3108

Query 1164  --------------------------------------------------------------------------  1163
                                                                                      
Sbjct 3109  TATAGTCACTCATGCAAAATCACACCGCTAGCAGAGCTCACTAAGGAAGGAAGCAATGTGGTAAAACAGTCTTG  3182

Query 1164  -----------------------------------GGTTGCTGCTGTTGATCTTCTGGTTCCTGGAGTTGGGGA  1202
                                               |||||||||||||||||||||||||||||||||||||||
Sbjct 3183  ACCATGAGGGAAAGGGAATACATGTTTGGGAGCAAGGTTGCTGCTGTTGATCTTCTGGTTCCTGGAGTTGGGGA  3256

Query 1203  ACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCGCTTAGCCAGATCGGGACTTACAG  1276
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
Sbjct 3257  ACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCGCTTAGCCA---------------  3315

Query 1277  AAGTCTACCAATGGTATCTGGACCTTCGTCGATTTGGATCTGTGCCACATGGAGGTTTTGGGATGGGATTTGAA  1350
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3316  ------------GGTATCTGGACCTTCGTCGATTTGGATCTGTGCCACATGGAGGTTTTGGGATGGGATTTGAA  3377

Query 1351  CGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTTCCCAAGGTTTCCTCA-TCATG  1423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3378  CGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTTCCCAAGGTTTCCTCATTCATG  3451

Query 1424  CCTTTTA-------------------------------------------------------------------  1430
            |||||||                                                                   
Sbjct 3452  CCTTTTATAGCTGGAAGATTGGTTAAGGAAAAGCACCCCCCATGGCAGAGACACTGCACATGATTGTGCATACA  3525

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 3526  GCAGAATGCATGTTTGGATTTTAGAAATGCAGATTTCAATATGTAATTGTTGTGCCATAAGATATCATAGAAAA  3599

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 3600  AATATAAGTGGTTGTGATTTTCTTAGAAAGTTGAGGGTATTTCACGTAAGGATGAGCTCCCGCAAGAAGAGGTA  3673

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 3674  CTTATAGCAAGGGGACTCTCAAATCCATTACCTCAATTAAGAAATGAAGAAATTGAATTAGTCTCAAAGTTTCT  3747

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 3748  TTTAAACTCTAAAACAGAATGAGATAATGTATTTTACGTTGTCTATAATCATTAAATCACTCCCTGTGTAATTT  3821

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 3822  GTGAGAACCATCTAGTAGCTCGAAATAAAATAATGTTGCATCTTTTCTCCCTTGCCATATACTTTGTGATAAAT  3895

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 3896  CCTTATCTCATTTTCAGTACTTCATTAAACATTGCAGAAAAAAATATTCCTTAAGGTCTTAATTGATTTAAAGA  3969

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 3970  AGTAGCTATTCTGAATTGAAATCTCCTTTCATTGAACTGGATGAAAAAATCATGTTTAATAACTGTTGCTTTTC  4043

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 4044  AATTTTCAAAGCTGTTGAGATATTACATTAAGTATTTCAACTCTTTAATCACTGTTGTTATAATTTGTTTATAT  4117

Query 1431  --------------------------------------------  1430
                                                        
Sbjct 4118  TTGATGTTTATAATTTGTCTAATAAAATAGATTTTTTTAATAGA  4161

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