Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14269
Subject:
XR_001785548.1
Aligned Length:
2513
Identities:
1227
Gaps:
1086

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACGGAAGAGCGAGCACGGGGTGACGTAGCTCAGTTGCAACGTGCTTTAAGTCTGGGTCTGCACTCCGGTCCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTACGGTGTGACACTGACCGCTGTGTTCCGTGTAGTCGAACCTTCTGTGCTTTCGGGAGCGGGACGCGGAGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGTCCCGTGGGAACTGCTCGGGGCGCGGAGGGAAGAGCGACAGGAGCGCATGACGGCAGGACTGCGCGGCTG  222

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  223  AAAAAGGCTGCTCTCGGGGACTGTGAGCCGGGACGTAGCCCGGCATCCCGTGGAACCCTGTCCGGTCTCGCCAT  296

Query    3  GCTGGGGGTCCGCTGCCTGCTGCGGTCCG-TGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCA  75
            |||.||||.|||..||||||| |||..|| |||||.||||||||||||...|||.|||||.||.|....|.||.
Sbjct  297  GCTCGGGGCCCGGCGCCTGCT-CGGCGCGCTGCGCCTCTGTTCCTCCGTTTCCTGCCCCAGGCCCCGCGCGTCT  369

Query   76  GCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGAT  149
            ||||||.||.|||||||||||||.|||.|||..|||.|||||||.||||||.||.|.|.|.|.|||||||||||
Sbjct  370  GCCAAAATGCGCGTGCGGGACGCCCTCAGGGTCCAGGACGCGAGAGGGGAGTGCGTAACGGTGCAGGGATGGAT  443

Query  150  TCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGG  223
            .||.||.|||.||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||||||.
Sbjct  444  CCGGTCCGTCAGATCCCAGAAGGAAGTTTTGTTCCTGCATGTAAATGACGGATCTTCTTTGGAAAGCCTTCAGA  517

Query  224  TTGTTGCAGATTCAGGCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATA  297
            |||||||.||||||.||.|.||||||||||||||.||||||||||||||||||.||||.||||||||||||.|.
Sbjct  518  TTGTTGCGGATTCAAGCTTCGACAGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGCTGGTC  591

Query  298  AAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAA  371
            |||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.|||||
Sbjct  592  AAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAAGCCAA  665

Query  372  GGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGA  445
            ||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||.||||
Sbjct  666  GGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTGCAGGA  739

Query  446  CTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGT  519
            ||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.|||||||||||.|
Sbjct  740  CTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGGACAAT  813

Query  520  GGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGA  593
            ||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||.|.||
Sbjct  814  GGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAAGTGGA  887

Query  594  ACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  667
            .||||||.|||||.|.||||.|||..||||||.||||||..|||||||||||||||||||||||||||||||||
Sbjct  888  GCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  961

Query  668  TTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCT  741
            ||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.||||||
Sbjct  962  TTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGAATTCT  1035

Query  742  CAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCT  815
            |||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 1036  CAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAGGATCT  1109

Query  816  TATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAAC  889
            .||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||||||.
Sbjct 1110  CATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGTTGAAT  1183

Query  890  TCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTTTTTAATCATT  963
            |.||||||.|.||||||||..|||||||.||||.||||.|||||||||||||||||||||||||..||||||||
Sbjct 1184  TGTGTCACCAGTTCATAGCTGCTGGCCAGAAGGGCAGACTAGAACATATGCTAAAAAACAACTTCCTAATCATT  1257

Query  964  TCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTAC-CCCAGAGTGGGGTGCTG  1036
            ||||||||.||.|||.|.||||||||||||||||||||||||||||||.||||||| |||| |||||||||.||
Sbjct 1258  TCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACCCA-AGTGGGGTGTTG  1330

Query 1037  ACCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCA  1110
            |.||||..||.||||||||.|||||||||||||..|||||||||||||||||.|||||.||.||||||||||||
Sbjct 1331  ATCTACAAACGGAACATGAGAAGTACCTGGTGAGACACTGTGGCAACATACCAGTCTTTGTCATTAATTATCCA  1404

Query 1111  TTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACAC---------------GGTTGC  1169
            |.|..|||||||||.||||||||||||||.|||||||||||.||||||.|.||               .|||||
Sbjct 1405  TCAGAACTCAAGCCCTTCTACATGAGGGAGAATGAAGATGGTCCTCAGAATACAGTAAGAAGATTATAAGTTGC  1478

Query 1170  TGCTGTTGATCTTCTGGTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCT  1243
            ||||||.||||||||||||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.
Sbjct 1479  TGCTGTAGATCTTCTGGTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCC  1552

Query 1244  TAGAGGAGCGCTTAGCCAGATCGGGACTTACAGAAGTCTACCAATG----------------------------  1289
            |||||.||||..||||.|||||.||||||||..|||.||||||.||                            
Sbjct 1553  TAGAGCAGCGACTAGCAAGATCAGGACTTACGAAAGCCTACCAGTGGTAAGGATGTGGCCTATTCTGAGTCCCT  1626

Query 1290  ---------------------------------GTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCACATGGA  1329
                                             |||.|||||.||||| |.| ||||||||||||||.||||||
Sbjct 1627  GCAAAGGATTGTTACTTGTGCTTCCATTCCCCTGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCCCATGGA  1699

Query 1330  GGTTTTGGGATGGGATTTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTT  1403
            ||.||.|||||||||||||||||||||.|.|||||||||.|.||.|||||||||||||||||||||||||||||
Sbjct 1700  GGCTTCGGGATGGGATTTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTATCCCTTT  1773

Query 1404  CCCAAGGTTTCCTCA-TCATGCCTTTTA----------------------------------------------  1430
            .|||||||||.|||| ||.||.|||||.                                              
Sbjct 1774  TCCAAGGTTTACTCATTCGTGTCTTTTGTAGCTGAAAGACTGTTTAATGGAAAGTGCTCCATCACCTCATCTAC  1847

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1848  ACATGAGTATGTGTAGAAAAGACTGGGTGTTTGCAGTCTGGAAATGTGGATTTCAGTGCACAATTCTTGTGCTT  1921

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1922  TGAGATGTACTATATGAAAAATAGAAATGGTCTTGATCATCTTAAGTCAAAGGCTTTTCATGGACAGATAAACT  1995

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 1996  CCCCCAAGGAGAAATACTAAGAGCAAGTGGACTTTCAAATCTGTTACCTCAATTAGGACTGGGCATGTTGTCCA  2069

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2070  GCTAGTGGAGAAGCCGGTTCAGGAGAGTAACTTGAGCCCGGATAACATCTCAAGAAAGAGGAAAGGAAGATATG  2143

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2144  GAAGTGTAGGATCTCAGCGTTCCTCAGGGACTCTGACTTGATAGCCATGTCTCACCCTGCTTTGCCTTTCATTG  2217

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2218  GTAGCTCATTTCCCCTTGTTGTTTGTTTTTTAACAACTAGTGACTAAAAATAAGGTGATGTTGACCCTTTTCTT  2291

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2292  CCTTGCCATTTAAACTTACATGACACCAATCTTATTCTCTGTGCTTTACTCAACTTTATAGAAGAAAATATTCC  2365

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2366  TTTTCAGAGTCTAAATTGACTAATGAAGTGGCTATTCTGAATTGAACCATTCATCATTGGGTGGTGAAAAAAAA  2439

Query 1431  -----------------------------------------------------------------------  1430
                                                                                   
Sbjct 2440  TCACATTTAATAACTGTTGATCTTTAGTTTTAAAAGTTAAAGAGCTAAAATTAACCATTTAAACTTGTCAA  2510

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