Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14269
Subject:
XR_001785551.1
Aligned Length:
2802
Identities:
1229
Gaps:
1375

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACGGAAGAGCGAGCACGGGGTGACGTAGCTCAGTTGCAACGTGCTTTAAGTCTGGGTCTGCACTCCGGTCCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTACGGTGTGACACTGACCGCTGTGTTCCGTGTAGTCGAACCTTCTGTGCTTTCGGGAGCGGGACGCGGAGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGTCCCGTGGGAACTGCTCGGGGCGCGGAGGGAAGAGCGACAGGAGCGCATGACGGCAGGACTGCGCGGCTG  222

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  223  AAAAAGGCTGCTCTCGGGGACTGTGAGCCGGGACGTAGCCCGGCATCCCGTGGAACCCTGTCCGGTCTCGCCAT  296

Query    3  GCTGGGGGTCCGCTGCCTGCTGCGGTCCG-TGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCA  75
            |||.||||.|||..||||||| |||..|| |||||.||||||||||||...|||.|||||.||.|....|.||.
Sbjct  297  GCTCGGGGCCCGGCGCCTGCT-CGGCGCGCTGCGCCTCTGTTCCTCCGTTTCCTGCCCCAGGCCCCGCGCGTCT  369

Query   76  GCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGAT  149
            ||||||.||.|||||||||||||.|||.|||..|||.|||||||.||||||.||.|.|.|.|.|||||||||||
Sbjct  370  GCCAAAATGCGCGTGCGGGACGCCCTCAGGGTCCAGGACGCGAGAGGGGAGTGCGTAACGGTGCAGGGATGGAT  443

Query  150  TCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGG  223
            .||.||.|||.||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||||||.
Sbjct  444  CCGGTCCGTCAGATCCCAGAAGGAAGTTTTGTTCCTGCATGTAAATGACGGATCTTCTTTGGAAAGCCTTCAGA  517

Query  224  TTGTTGCAGATTCAGGCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATA  297
            |||||||.||||||.||.|.||||||||||||||.||||||||||||||||||.||||.||||||||||||.|.
Sbjct  518  TTGTTGCGGATTCAAGCTTCGACAGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGCTGGTC  591

Query  298  AAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAA  371
            |||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.|||||
Sbjct  592  AAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAAGCCAA  665

Query  372  GGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGA  445
            ||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||.||||
Sbjct  666  GGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTGCAGGA  739

Query  446  CTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGT  519
            ||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.|||||||||||.|
Sbjct  740  CTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGGACAAT  813

Query  520  GGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGA  593
            ||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||.|.||
Sbjct  814  GGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAAGTGGA  887

Query  594  ACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  667
            .||||||.|||||.|.||||.|||..||||||.||||||..|||||||||||||||||||||||||||||||||
Sbjct  888  GCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  961

Query  668  TTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCT  741
            ||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.||||||
Sbjct  962  TTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGAATTCT  1035

Query  742  CAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCT  815
            |||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 1036  CAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAGGATCT  1109

Query  816  TATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAAC  889
            .||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||||||.
Sbjct 1110  CATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGTTGAAT  1183

Query  890  TCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTT----------  953
            |.||||||.|.||||||||..|||||||.||||.||||.|||||||||||||||||||||||||          
Sbjct 1184  TGTGTCACCAGTTCATAGCTGCTGGCCAGAAGGGCAGACTAGAACATATGCTAAAAAACAACTTCCTAATGTTT  1257

Query  954  --------------------------------------------------------------------------  953
                                                                                      
Sbjct 1258  CTCTTCAGATGTCACCAACTCAGAGTGCCTTTCCTGAACATCTCCTCTAAAATGGCAGACACCTGCCCTACTGT  1331

Query  954  ---------------------------------------------------TTTAAT-----------------  959
                                                               ||||||                 
Sbjct 1332  ATCCCTACTGTATTTTTCTTTGTAATAGTTCTCTATCACCGTTGTTATTTGTTTAATTTGCCCCACACATCAGC  1405

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 1406  GCACATGTCTTGGCCCCAAGAAGATGCCCTCTGCCCTCACATACACACATCTTGGCTCCAAGAAGGCAGGAGCT  1479

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 1480  TTATTTTGTTTGTCATTTTCCAGTACCTAGAGTAATACTTAGCATCTGGTAGCTGTGACATACATGATTGCTAG  1553

Query  960  ----CATTTCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTAC-CCCAGAGTG  1028
                ||||||||||||.||.|||.|.||||||||||||||||||||||||||||||.||||||| |||| ||||
Sbjct 1554  ACGACATTTCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACCCA-AGTG  1626

Query 1029  GGGTGCTGACCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTA  1102
            |||||.|||.||||..||.||||||||.|||||||||||||..|||||||||||||||||.|||||.||.||||
Sbjct 1627  GGGTGTTGATCTACAAACGGAACATGAGAAGTACCTGGTGAGACACTGTGGCAACATACCAGTCTTTGTCATTA  1700

Query 1103  ATTATCCATTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTT  1176
            |||||||||.|..|||||||||.||||||||||||||.|||||||||||.||||||.|.||.|||||||||||.
Sbjct 1701  ATTATCCATCAGAACTCAAGCCCTTCTACATGAGGGAGAATGAAGATGGTCCTCAGAATACAGTTGCTGCTGTA  1774

Query 1177  GATCTTCTGGTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGA  1250
            ||||||||||||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.|||||.|
Sbjct 1775  GATCTTCTGGTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCCTAGAGCA  1848

Query 1251  GCGCTTAGCCAGATCGGGACTTACAGAAGTCTACCAATG-----------------------------------  1289
            |||..||||.|||||.||||||||..|||.||||||.||                                   
Sbjct 1849  GCGACTAGCAAGATCAGGACTTACGAAAGCCTACCAGTGGTAAGGATGTGGCCTATTCTGAGTCCCTGCAAAGG  1922

Query 1290  --------------------------GTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCACATGGAGGTTTTG  1336
                                      |||.|||||.||||| |.| ||||||||||||||.||||||||.||.|
Sbjct 1923  ATTGTTACTTGTGCTTCCATTCCCCTGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCCCATGGAGGCTTCG  1995

Query 1337  GGATGGGATTTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTATCCCTTTCCCAAGG  1410
            ||||||||||||||||||||.|.|||||||||.|.||.|||||||||||||||||||||||||||||.||||||
Sbjct 1996  GGATGGGATTTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTATCCCTTTTCCAAGG  2069

Query 1411  TTTCCTCA-TCATGCCTTTTA-----------------------------------------------------  1430
            |||.|||| ||.||.|||||.                                                     
Sbjct 2070  TTTACTCATTCGTGTCTTTTGTAGCTGAAAGACTGTTTAATGGAAAGTGCTCCATCACCTCATCTACACATGAG  2143

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2144  TATGTGTAGAAAAGACTGGGTGTTTGCAGTCTGGAAATGTGGATTTCAGTGCACAATTCTTGTGCTTTGAGATG  2217

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2218  TACTATATGAAAAATAGAAATGGTCTTGATCATCTTAAGTCAAAGGCTTTTCATGGACAGATAAACTCCCCCAA  2291

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2292  GGAGAAATACTAAGAGCAAGTGGACTTTCAAATCTGTTACCTCAATTAGGACTGGGCATGTTGTCCAGCTAGTG  2365

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2366  GAGAAGCCGGTTCAGGAGAGTAACTTGAGCCCGGATAACATCTCAAGAAAGAGGAAAGGAAGATATGGAAGTGT  2439

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2440  AGGATCTCAGCGTTCCTCAGGGACTCTGACTTGATAGCCATGTCTCACCCTGCTTTGCCTTTCATTGGTAGCTC  2513

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2514  ATTTCCCCTTGTTGTTTGTTTTTTAACAACTAGTGACTAAAAATAAGGTGATGTTGACCCTTTTCTTCCTTGCC  2587

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2588  ATTTAAACTTACATGACACCAATCTTATTCTCTGTGCTTTACTCAACTTTATAGAAGAAAATATTCCTTTTCAG  2661

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2662  AGTCTAAATTGACTAATGAAGTGGCTATTCTGAATTGAACCATTCATCATTGGGTGGTGAAAAAAAATCACATT  2735

Query 1431  ----------------------------------------------------------------  1430
                                                                            
Sbjct 2736  TAATAACTGTTGATCTTTAGTTTTAAAAGTTAAAGAGCTAAAATTAACCATTTAAACTTGTCAA  2799

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